GPR162 (G protein-coupled receptor 162) - Rat Genome Database

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Gene: GPR162 (G protein-coupled receptor 162) Chlorocebus sabaeus
Analyze
Symbol: GPR162
Name: G protein-coupled receptor 162
RGD ID: 18775375
Description: ENCODES a protein that exhibits G protein-coupled receptor activity (inferred); INVOLVED IN G protein-coupled receptor signaling pathway (inferred); signal transduction (inferred); ASSOCIATED WITH genetic disease (ortholog); Hyperphosphatemic Familial Tumoral Calcinosis 1 (ortholog); lymphoproliferative syndrome 2 (ortholog); FOUND IN membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: probable G-protein coupled receptor 162
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1116,854,620 - 6,860,322 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl116,856,797 - 6,860,104 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660631,363,247 - 1,369,103 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
membrane  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
GPR162
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1116,854,620 - 6,860,322 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl116,856,797 - 6,860,104 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660631,363,247 - 1,369,103 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
GPR162
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38126,821,821 - 6,827,421 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl126,821,624 - 6,829,972 (+)EnsemblGRCh38hg38GRCh38
GRCh37126,930,987 - 6,936,586 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36126,801,224 - 6,806,844 (+)NCBINCBI36Build 36hg18NCBI36
Celera128,548,244 - 8,553,865 (+)NCBICelera
Cytogenetic Map12p13.31NCBI
HuRef126,785,923 - 6,789,875 (+)NCBIHuRef
CHM1_1126,929,646 - 6,935,267 (+)NCBICHM1_1
T2T-CHM13v2.0126,831,114 - 6,836,714 (+)NCBIT2T-CHM13v2.0
Gpr162
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396124,835,407 - 124,840,900 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl6124,835,407 - 124,840,946 (-)EnsemblGRCm39 Ensembl
GRCm386124,858,444 - 124,864,195 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6124,858,444 - 124,863,983 (-)EnsemblGRCm38mm10GRCm38
MGSCv376124,808,462 - 124,813,935 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv366124,824,063 - 124,829,536 (-)NCBIMGSCv36mm8
Celera6126,534,568 - 126,540,042 (-)NCBICelera
Cytogenetic Map6F2NCBI
cM Map659.17NCBI
Gpr162
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84159,348,465 - 159,354,577 (-)NCBIGRCr8
mRatBN7.24157,662,200 - 157,668,341 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4157,662,200 - 157,668,121 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4163,890,700 - 163,896,599 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04159,673,611 - 159,679,510 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04158,308,860 - 158,314,766 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04157,375,184 - 157,381,780 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4157,375,184 - 157,381,105 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04224,392,962 - 224,398,883 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44160,980,644 - 160,986,565 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.14161,225,831 - 161,231,342 (-)NCBI
Celera4146,399,824 - 146,405,745 (-)NCBICelera
Cytogenetic Map4q42NCBI
Gpr162
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554134,425,344 - 4,428,901 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554134,425,609 - 4,428,901 (+)NCBIChiLan1.0ChiLan1.0
GPR162
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21012,383,866 - 12,389,723 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11212,380,623 - 12,386,481 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0126,952,556 - 6,958,414 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1126,864,927 - 6,870,797 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl126,864,927 - 6,870,797 (+)Ensemblpanpan1.1panPan2
GPR162
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12738,195,805 - 38,201,581 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2738,196,031 - 38,199,570 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha278,413,741 - 8,421,028 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02738,548,654 - 38,555,954 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2738,548,661 - 38,554,426 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12738,422,696 - 38,429,967 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02738,463,883 - 38,471,188 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0277,892,479 - 7,899,764 (+)NCBIUU_Cfam_GSD_1.0
Gpr162
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945102,323,141 - 102,329,340 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936709990,202 - 996,854 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936709990,690 - 996,849 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GPR162
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl563,885,715 - 63,891,219 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1563,885,710 - 63,891,436 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2566,320,144 - 66,325,863 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Gpr162
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248603,493,075 - 3,498,374 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248603,492,761 - 3,497,896 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium 31 3 53
Low 5 17 7
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSCSAT00000008336   ⟹   ENSCSAP00000006482
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl116,856,797 - 6,860,104 (+)Ensembl
RefSeq Acc Id: XM_007967411   ⟹   XP_007965602
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1116,854,707 - 6,860,322 (+)NCBI
Vero_WHO_p1.0NW_0236660631,363,247 - 1,369,103 (-)NCBI
Sequence:
RefSeq Acc Id: XM_007967412   ⟹   XP_007965603
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1116,854,620 - 6,860,322 (+)NCBI
Vero_WHO_p1.0NW_0236660631,363,247 - 1,369,103 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_007965602 (Get FASTA)   NCBI Sequence Viewer  
  XP_007965603 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000006482.1
Reference Protein Sequences
RefSeq Acc Id: XP_007965603   ⟸   XM_007967412
- Peptide Label: isoform X2
RefSeq Acc Id: XP_007965602   ⟸   XM_007967411
- Peptide Label: isoform X1
- UniProtKB: A0A0D9RCZ3 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCSAP00000006482   ⟸   ENSCSAT00000008336


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000010255 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000008336.1 UniProtKB/TrEMBL
Gene3D-CATH Rhodopsin 7-helix transmembrane proteins UniProtKB/TrEMBL
InterPro GCR_153/162 UniProtKB/TrEMBL
  GPCR_Rhodpsn UniProtKB/TrEMBL
  GPCR_Rhodpsn_7TM UniProtKB/TrEMBL
  GPR162 UniProtKB/TrEMBL
KEGG Report csab:103218478 UniProtKB/TrEMBL
NCBI Gene GPR162 ENTREZGENE
PANTHER PTHR16518 UniProtKB/TrEMBL
  PTHR16518:SF6 UniProtKB/TrEMBL
Pfam 7tm_1 UniProtKB/TrEMBL
PRINTS GPR153GPR162 UniProtKB/TrEMBL
  GPR162 UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F1_2 UniProtKB/TrEMBL
Superfamily-SCOP Family A G protein-coupled receptor-like UniProtKB/TrEMBL
UniProt A0A0D9RCZ3 ENTREZGENE, UniProtKB/TrEMBL