AAAS (aladin WD repeat nucleoporin) - Rat Genome Database

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Gene: AAAS (aladin WD repeat nucleoporin) Chlorocebus sabaeus
Analyze
Symbol: AAAS
Name: aladin WD repeat nucleoporin
RGD ID: 18775334
Description: INVOLVED IN fertilization (ortholog); learning (ortholog); microtubule bundle formation (ortholog); ASSOCIATED WITH Abnormal Reflexes (ortholog); achalasia (ortholog); genetic disease (ortholog); FOUND IN centrosome (ortholog); cytosol (ortholog); mitotic spindle (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: aladin
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11149,424,469 - 49,432,082 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666037196,629,094 - 196,647,843 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
AAAS
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11149,424,469 - 49,432,082 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666037196,629,094 - 196,647,843 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
AAAS
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381253,307,460 - 53,321,610 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1253,307,456 - 53,324,864 (-)EnsemblGRCh38hg38GRCh38
GRCh371253,701,244 - 53,715,394 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361251,987,507 - 52,001,648 (-)NCBINCBI36Build 36hg18NCBI36
Build 341251,987,507 - 52,001,641NCBI
Celera1253,350,517 - 53,364,688 (-)NCBICelera
Cytogenetic Map12q13.13NCBI
HuRef1250,742,753 - 50,756,938 (-)NCBIHuRef
CHM1_11253,667,677 - 53,682,600 (-)NCBICHM1_1
T2T-CHM13v2.01253,273,162 - 53,287,327 (-)NCBIT2T-CHM13v2.0
Aaas
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3915102,246,682 - 102,259,194 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl15102,246,687 - 102,259,206 (-)EnsemblGRCm39 Ensembl
GRCm3815102,338,247 - 102,350,759 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl15102,338,252 - 102,350,771 (-)EnsemblGRCm38mm10GRCm38
MGSCv3715102,168,678 - 102,181,190 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3615102,166,290 - 102,178,732 (-)NCBIMGSCv36mm8
Celera15104,495,249 - 104,507,826 (-)NCBICelera
Cytogenetic Map15F3NCBI
cM Map1557.49NCBI
Aaas
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87135,342,901 - 135,362,545 (-)NCBIGRCr8
mRatBN7.27133,464,315 - 133,483,961 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7133,464,315 - 133,483,961 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx7135,225,355 - 135,244,947 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07137,454,735 - 137,474,327 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07137,439,883 - 137,459,475 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.07143,937,198 - 143,956,668 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7143,937,199 - 143,956,668 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07141,733,240 - 141,751,976 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47141,088,006 - 141,107,581 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.17141,164,476 - 141,184,631 (-)NCBI
Celera7129,897,723 - 129,917,036 (-)NCBICelera
Cytogenetic Map7q36NCBI
Aaas
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955458567,518 - 577,372 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955458567,487 - 577,228 (-)NCBIChiLan1.0ChiLan1.0
AAAS
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21040,864,475 - 40,878,699 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11240,861,295 - 40,875,460 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01235,432,834 - 35,446,969 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11236,214,444 - 36,227,886 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1236,214,444 - 36,227,886 (+)Ensemblpanpan1.1panPan2
AAAS
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1271,889,078 - 1,900,097 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl271,889,141 - 1,900,094 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2744,349,182 - 44,360,102 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0271,893,644 - 1,904,560 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl271,881,916 - 1,904,554 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1271,911,863 - 1,922,895 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0271,896,881 - 1,907,795 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02744,749,806 - 44,760,823 (-)NCBIUU_Cfam_GSD_1.0
Aaas
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494562,559,999 - 62,575,281 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493651210,588,786 - 10,604,861 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493651210,589,549 - 10,604,831 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
AAAS
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl518,526,076 - 18,537,830 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1518,526,070 - 18,537,835 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2518,961,802 - 18,973,554 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Aaas
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046249041,419,835 - 1,432,741 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046249041,419,809 - 1,432,117 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_037997052   ⟹   XP_037852980
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_023666037196,629,094 - 196,643,688 (+)NCBI
RefSeq Acc Id: XM_037997053   ⟹   XP_037852981
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_023666037196,629,094 - 196,643,688 (+)NCBI
RefSeq Acc Id: XM_037997054   ⟹   XP_037852982
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_023666037196,629,094 - 196,647,843 (+)NCBI
RefSeq Acc Id: XM_037997055   ⟹   XP_037852983
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_023666037196,629,422 - 196,643,688 (+)NCBI
RefSeq Acc Id: XM_037997056   ⟹   XP_037852984
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_023666037196,629,186 - 196,643,688 (+)NCBI
Protein Sequences
Protein RefSeqs XP_037852980 (Get FASTA)   NCBI Sequence Viewer  
  XP_037852981 (Get FASTA)   NCBI Sequence Viewer  
  XP_037852982 (Get FASTA)   NCBI Sequence Viewer  
  XP_037852983 (Get FASTA)   NCBI Sequence Viewer  
  XP_037852984 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000001809.1
Reference Protein Sequences
RefSeq Acc Id: XP_037852982   ⟸   XM_037997054
- Peptide Label: isoform X3
RefSeq Acc Id: XP_037852981   ⟸   XM_037997053
- Peptide Label: isoform X2
RefSeq Acc Id: XP_037852980   ⟸   XM_037997052
- Peptide Label: isoform X1
RefSeq Acc Id: XP_037852984   ⟸   XM_037997056
- Peptide Label: isoform X4
- UniProtKB: A0A0D9QZM0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_037852983   ⟸   XM_037997055
- Peptide Label: isoform X4
- UniProtKB: A0A0D9QZM0 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000005499 UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000003563.1 UniProtKB/TrEMBL
InterPro Aladin UniProtKB/TrEMBL
NCBI Gene AAAS ENTREZGENE
PANTHER ALADIN UniProtKB/TrEMBL
  PTHR14494 UniProtKB/TrEMBL
Superfamily-SCOP 3-carboxy-cis,cis-mucoante lactonizing enzyme UniProtKB/TrEMBL
UniProt A0A0D9QZM0 ENTREZGENE, UniProtKB/TrEMBL