CDC37L1 (cell division cycle 37 like 1, HSP90 cochaperone) - Rat Genome Database

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Gene: CDC37L1 (cell division cycle 37 like 1, HSP90 cochaperone) Chlorocebus sabaeus
Analyze
Symbol: CDC37L1
Name: cell division cycle 37 like 1, HSP90 cochaperone
RGD ID: 18775157
Description: ENCODES a protein that exhibits heat shock protein binding (inferred); protein-folding chaperone binding (inferred); unfolded protein binding (inferred); INVOLVED IN protein folding (inferred); protein stabilization (inferred); ASSOCIATED WITH chromosome 9p deletion syndrome (ortholog); genetic disease (ortholog); FOUND IN cytoplasm (inferred); cytosol (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: cell division cycle 37 like 1; hsp90 co-chaperone Cdc37-like 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11274,837,411 - 74,864,343 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1274,835,554 - 74,864,381 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603863,165,225 - 63,193,264 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IEA)
cytosol  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
CDC37L1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11274,837,411 - 74,864,343 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1274,835,554 - 74,864,381 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603863,165,225 - 63,193,264 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
CDC37L1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3894,679,569 - 4,708,399 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl94,679,559 - 4,708,399 (+)EnsemblGRCh38hg38GRCh38
GRCh3794,679,569 - 4,708,399 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3694,669,566 - 4,696,594 (+)NCBINCBI36Build 36hg18NCBI36
Build 3494,669,668 - 4,696,501NCBI
Celera94,602,076 - 4,629,102 (+)NCBICelera
Cytogenetic Map9p24.1NCBI
HuRef94,634,917 - 4,661,941 (+)NCBIHuRef
CHM1_194,679,643 - 4,706,661 (+)NCBICHM1_1
T2T-CHM13v2.094,683,245 - 4,712,075 (+)NCBIT2T-CHM13v2.0
Cdc37l1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391928,959,049 - 29,008,832 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1928,967,752 - 29,004,081 (+)EnsemblGRCm39 Ensembl
GRCm381928,990,337 - 29,026,664 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1928,990,352 - 29,026,681 (+)EnsemblGRCm38mm10GRCm38
MGSCv371929,064,984 - 29,092,059 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361929,056,491 - 29,083,566 (+)NCBIMGSCv36mm8
Celera1929,765,825 - 29,792,914 (+)NCBICelera
Cytogenetic Map19C1NCBI
cM Map1923.61NCBI
Cdc37l1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81236,118,630 - 236,147,527 (+)NCBIGRCr8
mRatBN7.21226,705,019 - 226,733,994 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1226,705,003 - 226,761,175 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1235,108,671 - 235,136,613 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01242,038,327 - 242,066,269 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01234,863,584 - 234,891,520 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01247,110,147 - 247,139,113 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1247,107,397 - 247,138,155 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01254,349,889 - 254,377,705 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41232,624,609 - 232,652,549 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11232,788,631 - 232,816,571 (+)NCBI
Celera1223,857,920 - 223,885,860 (+)NCBICelera
Cytogenetic Map1q52NCBI
Cdc37l1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554348,969,289 - 8,998,742 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554348,969,289 - 8,996,921 (+)NCBIChiLan1.0ChiLan1.0
CDC37L1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v211119,852,821 - 119,879,839 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan19119,858,819 - 119,885,610 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v094,511,737 - 4,539,837 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.194,699,604 - 4,727,529 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl94,699,604 - 4,727,529 (+)Ensemblpanpan1.1panPan2
CDC37L1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1193,056,912 - 93,083,963 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl193,056,985 - 93,082,638 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha193,529,511 - 93,556,532 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0193,611,127 - 93,638,707 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl193,591,480 - 93,639,447 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1193,242,975 - 93,269,991 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0192,966,212 - 92,992,207 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0193,731,262 - 93,758,833 (+)NCBIUU_Cfam_GSD_1.0
Cdc37l1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947140,627,664 - 140,652,215 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936503520,804 - 545,399 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936503520,614 - 545,353 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CDC37L1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1217,243,151 - 217,287,963 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11217,260,927 - 217,287,996 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21243,098,789 - 243,123,525 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Cdc37l1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247369,435,467 - 9,466,236 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247369,435,450 - 9,466,248 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium 36 59
Low 20 1
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_007969349 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JACDXN010000006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSCSAT00000006853   ⟹   ENSCSAP00000005047
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl1274,835,554 - 74,864,381 (-)Ensembl
RefSeq Acc Id: XM_007969349   ⟹   XP_007967540
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11274,837,411 - 74,864,343 (-)NCBI
Vero_WHO_p1.0NW_02366603863,165,225 - 63,193,264 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_007967540 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000005047
  ENSCSAP00000005047.1
Reference Protein Sequences
RefSeq Acc Id: XP_007967540   ⟸   XM_007969349
- UniProtKB: A0A0D9R8V8 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCSAP00000005047   ⟸   ENSCSAT00000006853


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000008790 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000006853.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.58.610 UniProtKB/TrEMBL
InterPro Cdc37 UniProtKB/TrEMBL
  Cdc37_Hsp90-bd UniProtKB/TrEMBL
  Cdc37_Hsp90-bd_sf UniProtKB/TrEMBL
KEGG Report csab:103219501 UniProtKB/TrEMBL
NCBI Gene CDC37L1 ENTREZGENE
PANTHER HSP90 CO-CHAPERONE CDC37-LIKE 1 UniProtKB/TrEMBL
  PTHR12800 UniProtKB/TrEMBL
Pfam CDC37_M UniProtKB/TrEMBL
SMART CDC37_M UniProtKB/TrEMBL
Superfamily-SCOP Hsp90 co-chaperone CDC37 UniProtKB/TrEMBL
UniProt A0A0D9R8V8 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-05-18 CDC37L1  cell division cycle 37 like 1, HSP90 cochaperone  CDC37L1  cell division cycle 37 like 1  Symbol and/or name change 5135510 APPROVED