CCNL1 (cyclin L1) - Rat Genome Database

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Gene: CCNL1 (cyclin L1) Chlorocebus sabaeus
Analyze
Symbol: CCNL1
Name: cyclin L1
RGD ID: 18769236
Description: ENCODES a protein that exhibits cyclin-dependent protein serine/threonine kinase regulator activity (inferred); INVOLVED IN regulation of RNA splicing (inferred); regulation of transcription by RNA polymerase II (inferred); ASSOCIATED WITH genetic disease (ortholog); FOUND IN cyclin-dependent protein kinase holoenzyme complex (ortholog); nuclear speck (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: cyclin-L1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11533,592,391 - 33,608,124 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1533,593,500 - 33,609,195 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660416,181,869 - 6,195,601 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
CCNL1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11533,592,391 - 33,608,124 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1533,593,500 - 33,609,195 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660416,181,869 - 6,195,601 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
CCNL1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383157,143,121 - 157,160,147 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3157,146,508 - 157,160,760 (-)EnsemblGRCh38hg38GRCh38
GRCh373156,860,910 - 156,877,936 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 363158,348,279 - 158,361,176 (-)NCBINCBI36Build 36hg18NCBI36
Build 343158,348,286 - 158,361,184NCBI
Celera3155,289,188 - 155,302,097 (-)NCBICelera
Cytogenetic Map3q25.31NCBI
HuRef3154,261,958 - 154,274,873 (-)NCBIHuRef
CHM1_13156,828,587 - 156,841,484 (-)NCBICHM1_1
T2T-CHM13v2.03159,917,663 - 159,934,689 (-)NCBIT2T-CHM13v2.0
Ccnl1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39365,853,333 - 65,869,451 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl365,853,572 - 65,865,670 (-)EnsemblGRCm39 Ensembl
GRCm38365,945,908 - 65,962,029 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl365,946,151 - 65,958,249 (-)EnsemblGRCm38mm10GRCm38
MGSCv37365,750,073 - 65,762,147 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36366,034,080 - 66,046,148 (-)NCBIMGSCv36mm8
Celera366,084,322 - 66,096,395 (-)NCBICelera
Cytogenetic Map3E1NCBI
cM Map330.25NCBI
Ccnl1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82152,495,169 - 152,508,855 (-)NCBIGRCr8
mRatBN7.22150,184,865 - 150,199,524 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2150,184,798 - 150,197,368 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2157,294,697 - 157,307,010 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02155,345,203 - 155,357,516 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02149,977,917 - 149,990,230 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02157,747,295 - 157,759,838 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2157,747,542 - 157,759,838 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02177,110,678 - 177,122,977 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42155,757,335 - 155,769,633 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12155,707,300 - 155,719,596 (-)NCBI
Celera2144,599,445 - 144,611,743 (-)NCBICelera
Cytogenetic Map2q31NCBI
Ccnl1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554488,113,216 - 8,124,628 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554488,112,774 - 8,125,912 (-)NCBIChiLan1.0ChiLan1.0
CCNL1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22155,055,162 - 155,075,647 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13155,062,940 - 155,080,377 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03154,192,971 - 154,210,468 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13162,250,825 - 162,264,645 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3162,251,326 - 162,263,174 (-)Ensemblpanpan1.1panPan2
CCNL1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12350,639,851 - 50,643,777 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2350,512,891 - 50,525,567 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02351,273,830 - 51,286,528 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2351,273,791 - 51,287,522 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12350,857,079 - 50,869,721 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02350,909,267 - 50,921,953 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02351,194,168 - 51,206,919 (-)NCBIUU_Cfam_GSD_1.0
Ccnl1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560285,676,959 - 85,689,190 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365194,044,708 - 4,056,993 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365194,044,762 - 4,056,987 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CCNL1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1396,986,266 - 97,002,467 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11396,984,542 - 97,004,401 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213105,143,782 - 105,161,937 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Ccnl1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473034,754,581 - 34,768,879 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473034,712,248 - 34,768,236 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium 36 16 35
Low 4 25
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSCSAT00000010164   ⟹   ENSCSAP00000008261
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl1533,593,500 - 33,609,195 (+)Ensembl
RefSeq Acc Id: XM_008008596   ⟹   XP_008006787
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11533,592,391 - 33,605,854 (+)NCBI
Vero_WHO_p1.0NW_0236660416,181,869 - 6,195,601 (+)NCBI
Sequence:
RefSeq Acc Id: XR_005241856
Type: NON-CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_0236660416,181,869 - 6,193,266 (+)NCBI
Protein Sequences
Protein RefSeqs XP_008006787 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000008261
  ENSCSAP00000008261.1
Reference Protein Sequences
RefSeq Acc Id: XP_008006787   ⟸   XM_008008596
- UniProtKB: A0A0D9RI22 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCSAP00000008261   ⟸   ENSCSAT00000010164


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000012077 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000010164.1 UniProtKB/TrEMBL
Gene3D-CATH Cyclin-like UniProtKB/TrEMBL
InterPro Cyclin-like UniProtKB/TrEMBL
  Cyclin-like_sf UniProtKB/TrEMBL
  Cyclin/Ssn8 UniProtKB/TrEMBL
  Cyclin_C-dom UniProtKB/TrEMBL
  Cyclin_N UniProtKB/TrEMBL
KEGG Report csab:103241423 UniProtKB/TrEMBL
NCBI Gene CCNL1 ENTREZGENE
PANTHER PTHR10026 UniProtKB/TrEMBL
  PTHR10026:SF64 UniProtKB/TrEMBL
Pfam Cyclin_C UniProtKB/TrEMBL
  Cyclin_N UniProtKB/TrEMBL
PIRSF Cyclin_L UniProtKB/TrEMBL
SMART CYCLIN UniProtKB/TrEMBL
  Cyclin_C UniProtKB/TrEMBL
Superfamily-SCOP SSF47954 UniProtKB/TrEMBL
UniProt A0A0D9RI22 ENTREZGENE, UniProtKB/TrEMBL