LOC103238406 (cyclic AMP-dependent transcription factor ATF-7) - Rat Genome Database

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Gene: LOC103238406 (cyclic AMP-dependent transcription factor ATF-7) Chlorocebus sabaeus
Analyze
Symbol: LOC103238406 (Ensembl: ATF7)
Name: cyclic AMP-dependent transcription factor ATF-7 (Ensembl:activating transcription factor 7)
RGD ID: 18768207
Description: ENCODES a protein that exhibits DNA-binding transcription repressor activity, RNA polymerase II-specific (ortholog); enzyme binding (ortholog); mitogen-activated protein kinase binding (ortholog); INVOLVED IN heart development (ortholog); hematopoietic progenitor cell differentiation (ortholog); hepatocyte apoptotic process (ortholog); ASSOCIATED WITH colorectal cancer (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN nucleoplasm (ortholog); RNA polymerase II transcription regulator complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: activating transcription factor 7; ATF7
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11149,608,653 - 49,728,702 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1149,618,136 - 49,728,289 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037196,321,751 - 196,441,009 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
LOC103238406
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11149,608,653 - 49,728,702 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1149,618,136 - 49,728,289 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037196,321,751 - 196,441,009 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
ATF7
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381253,507,856 - 53,626,382 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1253,507,856 - 53,626,410 (-)EnsemblGRCh38hg38GRCh38
GRCh371253,901,640 - 54,020,166 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361252,196,026 - 52,306,403 (-)NCBINCBI36Build 36hg18NCBI36
Build 341252,196,027 - 52,306,405NCBI
Celera1253,556,201 - 53,670,237 (-)NCBICelera
Cytogenetic Map12q13.13NCBI
HuRef1250,941,222 - 51,059,806 (-)NCBIHuRef
CHM1_11253,868,696 - 53,987,260 (-)NCBICHM1_1
T2T-CHM13v2.01253,473,861 - 53,592,424 (-)NCBIT2T-CHM13v2.0
Atf7
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3915102,434,381 - 102,533,899 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl15102,434,381 - 102,533,899 (-)EnsemblGRCm39 Ensembl
GRCm3815102,525,946 - 102,625,464 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl15102,525,946 - 102,625,464 (-)EnsemblGRCm38mm10GRCm38
MGSCv3715102,367,074 - 102,455,852 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3615102,364,677 - 102,453,455 (-)NCBIMGSCv36mm8
Celera15104,694,388 - 104,783,409 (-)NCBICelera
Cytogenetic Map15F3NCBI
cM Map1557.66NCBI
Atf7
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87135,537,351 - 135,649,188 (-)NCBIGRCr8
mRatBN7.27133,660,491 - 133,750,902 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7133,663,294 - 133,750,848 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx7135,419,512 - 135,506,589 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07137,648,883 - 137,735,950 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07137,635,114 - 137,722,181 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.07144,131,382 - 144,223,463 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7144,136,325 - 144,223,429 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07141,923,377 - 142,016,052 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47141,283,187 - 141,372,637 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.17141,351,602 - 141,448,693 (-)NCBI
Celera7130,091,319 - 130,178,104 (-)NCBICelera
Cytogenetic Map7q36NCBI
Atf7
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955458803,738 - 898,967 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955458803,738 - 898,847 (-)NCBIChiLan1.0ChiLan1.0
LOC100981854
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21040,559,286 - 40,676,753 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11240,556,050 - 40,673,517 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01235,128,031 - 35,245,505 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11235,914,378 - 36,026,225 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1235,914,378 - 36,021,141 (+)Ensemblpanpan1.1panPan2
LOC607149
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1271,617,466 - 1,711,356 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl271,617,289 - 1,706,637 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2744,543,239 - 44,632,547 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0271,621,590 - 1,710,939 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl271,621,533 - 1,710,913 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1271,638,801 - 1,728,103 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0271,621,077 - 1,711,380 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02744,944,942 - 45,034,279 (-)NCBIUU_Cfam_GSD_1.0
LOC101960773
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494562,279,991 - 62,381,384 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493651210,785,763 - 10,884,795 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493651210,780,826 - 10,884,806 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ATF7
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl518,728,694 - 18,838,542 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1518,726,329 - 18,838,670 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2519,164,389 - 19,285,213 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Atf7
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046249041,613,487 - 1,706,549 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046249041,604,083 - 1,705,739 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium 36 29
Low 20 31
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_008003462 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008003463 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008003464 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008003466 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008003467 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008003468 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008003469 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008003470 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008003471 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008003472 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_037997001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_037997002 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_037997003 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_037997004 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005239975 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005239976 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005239977 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_499176 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JACDXN010000005 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSCSAT00000003506   ⟹   ENSCSAP00000001781
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl1149,618,136 - 49,728,289 (-)Ensembl
RefSeq Acc Id: XM_008003463   ⟹   XP_008001654
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11149,613,004 - 49,728,702 (-)NCBI
Vero_WHO_p1.0NW_023666037196,321,751 - 196,440,725 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008003464   ⟹   XP_008001655
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11149,613,004 - 49,728,281 (-)NCBI
Vero_WHO_p1.0NW_023666037196,321,961 - 196,440,725 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008003467   ⟹   XP_008001658
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11149,613,004 - 49,728,702 (-)NCBI
Vero_WHO_p1.0NW_023666037196,321,751 - 196,440,725 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008003468   ⟹   XP_008001659
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11149,613,004 - 49,701,809 (-)NCBI
Vero_WHO_p1.0NW_023666037196,321,751 - 196,440,725 (+)NCBI
Sequence:
RefSeq Acc Id: XM_037997001   ⟹   XP_037852929
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_023666037196,322,179 - 196,440,725 (+)NCBI
RefSeq Acc Id: XM_037997002   ⟹   XP_037852930
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_023666037196,321,967 - 196,440,725 (+)NCBI
RefSeq Acc Id: XM_037997003   ⟹   XP_037852931
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_023666037196,321,751 - 196,440,725 (+)NCBI
RefSeq Acc Id: XM_037997004   ⟹   XP_037852932
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_023666037196,322,271 - 196,440,725 (+)NCBI
RefSeq Acc Id: XR_005239975
Type: NON-CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_023666037196,321,751 - 196,440,729 (+)NCBI
RefSeq Acc Id: XR_005239976
Type: NON-CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_023666037196,321,751 - 196,441,009 (+)NCBI
RefSeq Acc Id: XR_005239977
Type: NON-CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_023666037196,321,751 - 196,440,912 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_008001658   ⟸   XM_008003467
- Peptide Label: isoform X2
- UniProtKB: A0A0D9QZJ2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_008001654   ⟸   XM_008003463
- Peptide Label: isoform X1
RefSeq Acc Id: XP_008001655   ⟸   XM_008003464
- Peptide Label: isoform X1
RefSeq Acc Id: XP_008001659   ⟸   XM_008003468
- Peptide Label: isoform X5
RefSeq Acc Id: ENSCSAP00000001781   ⟸   ENSCSAT00000003506
RefSeq Acc Id: XP_037852931   ⟸   XM_037997003
- Peptide Label: isoform X3
RefSeq Acc Id: XP_037852930   ⟸   XM_037997002
- Peptide Label: isoform X2
- UniProtKB: A0A0D9QZJ2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_037852929   ⟸   XM_037997001
- Peptide Label: isoform X1
RefSeq Acc Id: XP_037852932   ⟸   XM_037997004
- Peptide Label: isoform X4


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000005473 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000003506.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.5.170 UniProtKB/TrEMBL
  Classic Zinc Finger UniProtKB/TrEMBL
InterPro bZIP UniProtKB/TrEMBL
  bZIP_sf UniProtKB/TrEMBL
  TF_CRE-BP1-typ UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/TrEMBL
NCBI Gene ATF7 ENTREZGENE
PANTHER CYCLIC AMP-DEPENDENT TRANSCRIPTION FACTOR ATF-7 UniProtKB/TrEMBL
  CYCLIC-AMP RESPONSE ELEMENT BINDING PROTEIN UniProtKB/TrEMBL
Pfam bZIP_1 UniProtKB/TrEMBL
PIRSF ATF2_CRE-BP1 UniProtKB/TrEMBL
PROSITE BZIP UniProtKB/TrEMBL
  BZIP_BASIC UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
SMART BRLZ UniProtKB/TrEMBL
  ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP SSF57667 UniProtKB/TrEMBL
  SSF57959 UniProtKB/TrEMBL
UniProt A0A0D9QZJ2 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-12-08 LOC103238406  cyclic AMP-dependent transcription factor ATF-7  ATF7  activating transcription factor 7  Symbol and/or name change 5135510 APPROVED