FDX2 (ferredoxin 2) - Rat Genome Database

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Gene: FDX2 (ferredoxin 2) Chlorocebus sabaeus
Analyze
Symbol: FDX2
Name: ferredoxin 2
RGD ID: 18767960
Description: ENCODES a protein that exhibits electron transfer activity (ortholog); INVOLVED IN [2Fe-2S] cluster assembly (ortholog); [4Fe-4S] cluster assembly (ortholog); PARTICIPATES IN mitochondrial iron-sulfur cluster protein biogenesis pathway; ASSOCIATED WITH familial hypercholesterolemia (ortholog); genetic disease (ortholog); immunodeficiency 35 (ortholog); FOUND IN mitochondrion (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: adrenodoxin-like protein, mitochondrial; FDX1L; ferredoxin 1 like; ferredoxin-2, mitochondrial
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.169,359,446 - 9,364,702 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl69,359,719 - 9,364,689 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607410,673,535 - 10,679,013 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
FDX2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.169,359,446 - 9,364,702 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl69,359,719 - 9,364,689 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607410,673,535 - 10,679,013 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
FDX2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381910,310,045 - 10,316,015 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1910,309,916 - 10,316,015 (-)EnsemblGRCh38hg38GRCh38
GRCh371910,420,721 - 10,426,691 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361910,281,891 - 10,287,691 (-)NCBINCBI36Build 36hg18NCBI36
Celera1910,316,284 - 10,322,080 (-)NCBICelera
Cytogenetic Map19p13.2NCBI
HuRef1910,001,153 - 10,006,949 (-)NCBIHuRef
CHM1_11910,421,449 - 10,427,224 (-)NCBICHM1_1
T2T-CHM13v2.01910,436,158 - 10,442,125 (-)NCBIT2T-CHM13v2.0
Fdx2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39920,978,808 - 20,984,827 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl920,978,816 - 20,984,910 (-)EnsemblGRCm39 Ensembl
GRCm38921,067,512 - 21,073,531 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl921,067,520 - 21,073,614 (-)EnsemblGRCm38mm10GRCm38
MGSCv37920,871,964 - 20,877,958 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36920,817,920 - 20,823,946 (-)NCBIMGSCv36mm8
Celera918,336,235 - 18,342,228 (-)NCBICelera
Cytogenetic Map9A3NCBI
cM Map97.7NCBI
Fdx2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8827,881,091 - 27,886,230 (-)NCBIGRCr8
mRatBN7.2819,604,916 - 19,609,832 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl819,604,916 - 19,609,849 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx823,624,325 - 23,629,241 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0821,922,179 - 21,927,095 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0819,834,580 - 19,839,500 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0822,086,534 - 22,091,450 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl822,086,534 - 22,091,450 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0822,143,206 - 22,148,122 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4820,091,424 - 20,096,340 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera820,999,337 - 21,004,253 (-)NCBICelera
Cytogenetic Map8q13NCBI
Fdx2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554951,590,493 - 1,594,760 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554951,590,493 - 1,594,760 (-)NCBIChiLan1.0ChiLan1.0
FDX2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22015,227,211 - 15,232,999 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11914,225,844 - 14,231,631 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0199,860,316 - 9,866,442 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11910,520,072 - 10,532,163 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1910,526,287 - 10,532,152 (-)Ensemblpanpan1.1panPan2
FDX2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12050,798,250 - 50,802,477 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2050,668,057 - 50,672,225 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02051,319,937 - 51,324,100 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2051,319,932 - 51,324,048 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12050,526,079 - 50,530,247 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02050,954,844 - 50,959,011 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02051,195,971 - 51,200,136 (+)NCBIUU_Cfam_GSD_1.0
LOC101962614
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118209,704,318 - 209,714,514 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936659640,587 - 644,804 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0 EnsemblNW_004936659645,191 - 650,246 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936659640,243 - 650,350 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
Fdx2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248282,468,757 - 2,473,600 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248282,468,761 - 2,473,657 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression

ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
reproductive system
76 36 20 36 36 60 20

Sequence


Ensembl Acc Id: ENSCSAT00000005364   ⟹   ENSCSAP00000003586
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl69,359,719 - 9,364,689 (-)Ensembl
RefSeq Acc Id: XM_007995223   ⟹   XP_007993414
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.169,359,446 - 9,364,702 (-)NCBI
Vero_WHO_p1.0NW_02366607410,673,535 - 10,679,013 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_007993414 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000003586
  ENSCSAP00000003586.1
RefSeq Acc Id: XP_007993414   ⟸   XM_007995223
- UniProtKB: A0A0D9R4P7 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCSAP00000003586   ⟸   ENSCSAT00000005364


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000007325 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000005364.1 UniProtKB/TrEMBL
Gene3D-CATH 3.10.20.30 UniProtKB/TrEMBL
InterPro 2Fe-2S_ferredoxin-like_sf UniProtKB/TrEMBL
  2Fe-2S_ferredoxin-type UniProtKB/TrEMBL
  Adrenodoxin UniProtKB/TrEMBL
  Adrenodoxin_Fe-S_BS UniProtKB/TrEMBL
  Beta-grasp_dom_sf UniProtKB/TrEMBL
NCBI Gene FDX2 ENTREZGENE
PANTHER FERREDOXIN-2, MITOCHONDRIAL UniProtKB/TrEMBL
  PTHR23426 UniProtKB/TrEMBL
Pfam Fer2 UniProtKB/TrEMBL
PRINTS ADRENODOXIN UniProtKB/TrEMBL
PROSITE 2FE2S_FER_2 UniProtKB/TrEMBL
  ADX UniProtKB/TrEMBL
Superfamily-SCOP SSF54292 UniProtKB/TrEMBL
UniProt A0A0D9R4P7 ENTREZGENE, UniProtKB/TrEMBL