CSRNP1 (cysteine and serine rich nuclear protein 1) - Rat Genome Database

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Gene: CSRNP1 (cysteine and serine rich nuclear protein 1) Chlorocebus sabaeus
Analyze
Symbol: CSRNP1
Name: cysteine and serine rich nuclear protein 1
RGD ID: 18767655
Description: ENCODES a protein that exhibits DNA-binding transcription activator activity, RNA polymerase II-specific (inferred); DNA-binding transcription factor activity (inferred); DNA-binding transcription factor activity, RNA polymerase II-specific (inferred); INVOLVED IN face morphogenesis (ortholog); platelet-derived growth factor receptor signaling pathway (ortholog); post-embryonic development (ortholog); ASSOCIATED WITH COVID-19 (ortholog); dilated cardiomyopathy (ortholog); genetic disease (ortholog); FOUND IN nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: cysteine/serine-rich nuclear protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.115262,329 - 274,003 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl15262,382 - 276,505 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660638,989,494 - 9,001,135 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
nucleus  (IEA)

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
CSRNP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.115262,329 - 274,003 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl15262,382 - 276,505 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660638,989,494 - 9,001,135 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
CSRNP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38339,141,855 - 39,154,641 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl339,141,855 - 39,154,562 (-)EnsemblGRCh38hg38GRCh38
GRCh37339,183,346 - 39,196,132 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36339,158,350 - 39,170,105 (-)NCBINCBI36Build 36hg18NCBI36
Build 34339,158,350 - 39,170,105NCBI
Celera339,123,855 - 39,135,613 (-)NCBICelera
Cytogenetic Map3p22.2NCBI
HuRef339,225,267 - 39,236,987 (-)NCBIHuRef
CHM1_1339,134,412 - 39,146,149 (-)NCBICHM1_1
T2T-CHM13v2.0339,154,032 - 39,166,846 (-)NCBIT2T-CHM13v2.0
Csrnp1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399119,800,229 - 119,813,808 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl9119,800,229 - 119,813,724 (-)EnsemblGRCm39 Ensembl
GRCm389119,971,163 - 119,984,742 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9119,971,163 - 119,984,658 (-)EnsemblGRCm38mm10GRCm38
MGSCv379119,880,284 - 119,893,776 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv369119,819,864 - 119,833,356 (-)NCBIMGSCv36mm8
Celera9120,438,418 - 120,451,791 (-)NCBICelera
Cytogenetic Map9F4NCBI
cM Map971.34NCBI
Csrnp1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88128,582,364 - 128,594,163 (-)NCBIGRCr8
mRatBN7.28119,704,712 - 119,717,767 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl8119,704,713 - 119,718,183 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx8125,286,306 - 125,292,387 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.08123,485,338 - 123,491,419 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.08121,317,988 - 121,324,069 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.08128,659,883 - 128,673,339 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8128,659,868 - 128,672,284 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08127,861,111 - 127,874,483 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48124,933,472 - 124,939,576 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.18124,954,224 - 124,959,315 (-)NCBI
Celera8118,851,298 - 118,857,393 (-)NCBICelera
Cytogenetic Map8q32NCBI
Csrnp1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542724,825,010 - 24,828,988 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542724,825,010 - 24,830,030 (+)NCBIChiLan1.0ChiLan1.0
CSRNP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2239,093,423 - 39,106,137 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1339,098,185 - 39,110,930 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0339,038,039 - 39,050,754 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1339,318,438 - 39,331,226 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl339,318,438 - 39,331,228 (-)Ensemblpanpan1.1panPan2
CSRNP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1238,815,848 - 8,829,062 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl238,817,053 - 8,822,979 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha238,851,706 - 8,864,913 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0239,100,430 - 9,113,613 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl239,100,766 - 9,112,381 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1238,914,084 - 8,927,283 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0239,056,600 - 9,069,784 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0239,049,815 - 9,063,034 (-)NCBIUU_Cfam_GSD_1.0
Csrnp1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118195,259,949 - 195,272,557 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647328,398,543 - 28,409,962 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647328,398,528 - 28,409,962 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CSRNP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1323,833,134 - 23,845,204 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11323,833,130 - 23,845,198 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21326,092,999 - 26,105,051 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Csrnp1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247311,829,105 - 1,841,216 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247311,829,158 - 1,841,216 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium 28 14
Low 8 20 46
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSCSAT00000012885   ⟹   ENSCSAP00000010902
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl15262,382 - 276,505 (+)Ensembl
RefSeq Acc Id: XM_007971714   ⟹   XP_007969905
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.115267,357 - 274,003 (+)NCBI
Vero_WHO_p1.0NW_0236660638,994,425 - 9,001,135 (+)NCBI
Sequence:
RefSeq Acc Id: XM_007971715   ⟹   XP_007969906
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.115262,329 - 274,003 (+)NCBI
Vero_WHO_p1.0NW_0236660638,989,494 - 9,001,135 (+)NCBI
Sequence:
RefSeq Acc Id: XM_037988434   ⟹   XP_037844362
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_0236660638,995,240 - 9,001,135 (+)NCBI
Protein Sequences
Protein RefSeqs XP_007969905 (Get FASTA)   NCBI Sequence Viewer  
  XP_007969906 (Get FASTA)   NCBI Sequence Viewer  
  XP_037844362 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000010902.1
Reference Protein Sequences
RefSeq Acc Id: XP_007969906   ⟸   XM_007971715
- Peptide Label: isoform X3
- UniProtKB: A0A0D9RQL3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_007969905   ⟸   XM_007971714
- Peptide Label: isoform X2
- UniProtKB: A0A0D9RQL3 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCSAP00000010902   ⟸   ENSCSAT00000012885
RefSeq Acc Id: XP_037844362   ⟸   XM_037988434
- Peptide Label: isoform X1
- UniProtKB: A0A0D9RQL3 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000014785 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000012885.1 UniProtKB/TrEMBL
InterPro CSRNP_N UniProtKB/TrEMBL
  Cys/Ser-rich_nuc_prot UniProtKB/TrEMBL
NCBI Gene CSRNP1 ENTREZGENE
PANTHER CYSTEINE/SERINE-RICH NUCLEAR PROTEIN 1 UniProtKB/TrEMBL
  PTHR13580 UniProtKB/TrEMBL
Pfam CSRNP_N UniProtKB/TrEMBL
PRINTS CYSSERRICHNP UniProtKB/TrEMBL
PROSITE PROKAR_LIPOPROTEIN UniProtKB/TrEMBL
UniProt A0A0D9RQL3 ENTREZGENE, UniProtKB/TrEMBL