UBN2 (ubinuclein 2) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: UBN2 (ubinuclein 2) Chlorocebus sabaeus
Analyze
Symbol: UBN2
Name: ubinuclein 2
RGD ID: 18765954
Description: ASSOCIATED WITH autism spectrum disorder (ortholog); genetic disease (ortholog); pleomorphic xanthoastrocytoma (ortholog); FOUND IN nucleoplasm (inferred); nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ubinuclein-2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.121107,974,621 - 108,075,403 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl21107,975,193 - 108,043,523 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660724,802,477 - 4,902,105 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
nucleoplasm  (IEA)
nucleus  (IEA)

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
UBN2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.121107,974,621 - 108,075,403 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl21107,975,193 - 108,043,523 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660724,802,477 - 4,902,105 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
UBN2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh387139,231,237 - 139,330,428 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl7139,230,356 - 139,308,236 (+)EnsemblGRCh38hg38GRCh38
GRCh377138,915,983 - 138,992,982 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 367138,566,991 - 138,643,522 (+)NCBINCBI36Build 36hg18NCBI36
Celera7133,654,387 - 133,731,150 (+)NCBICelera
Cytogenetic Map7q34NCBI
HuRef7133,226,153 - 133,302,818 (+)NCBIHuRef
CHM1_17138,849,976 - 138,926,728 (+)NCBICHM1_1
T2T-CHM13v2.07140,544,524 - 140,642,706 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v27138,260,797 - 138,337,551 (+)NCBI
Ubn2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39638,410,860 - 38,489,698 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl638,410,885 - 38,501,760 (+)EnsemblGRCm39 Ensembl
GRCm38638,433,925 - 38,512,763 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl638,433,950 - 38,524,825 (+)EnsemblGRCm38mm10GRCm38
MGSCv37638,383,925 - 38,462,763 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36638,363,558 - 38,432,208 (+)NCBIMGSCv36mm8
Celera638,414,640 - 38,493,684 (+)NCBICelera
Cytogenetic Map6B1NCBI
cM Map617.79NCBI
Ubn2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8468,130,497 - 68,218,471 (+)NCBIGRCr8
mRatBN7.2467,165,278 - 67,251,562 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl467,166,346 - 67,230,491 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx472,107,959 - 72,171,977 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0468,029,054 - 68,093,070 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0466,426,812 - 66,490,803 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0466,164,639 - 66,254,297 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl466,165,845 - 66,233,230 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0465,976,696 - 66,065,746 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4465,999,406 - 66,064,325 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1466,275,556 - 66,339,887 (+)NCBI
Celera462,184,683 - 62,248,122 (+)NCBICelera
Cytogenetic Map4q23NCBI
Ubn2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554943,758,616 - 3,834,887 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554943,734,414 - 3,828,174 (-)NCBIChiLan1.0ChiLan1.0
UBN2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26176,030,630 - 176,111,081 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1728,044,251 - 28,121,335 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v07131,179,164 - 131,256,244 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.17143,664,282 - 143,741,053 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl7143,664,596 - 143,730,647 (+)Ensemblpanpan1.1panPan2
UBN2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1169,446,345 - 9,510,925 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl169,446,345 - 9,510,625 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1610,284,611 - 10,352,577 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0169,343,004 - 9,430,188 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl169,344,195 - 9,429,826 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1169,293,499 - 9,380,630 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0169,137,439 - 9,224,523 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0169,208,600 - 9,295,741 (-)NCBIUU_Cfam_GSD_1.0
Ubn2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511815,657,534 - 15,736,458 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365923,483,373 - 3,553,618 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365923,483,124 - 3,554,890 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
UBN2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1810,377,077 - 10,451,255 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11810,371,121 - 10,451,243 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21810,841,038 - 10,933,658 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Ubn2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476519,628,458 - 19,756,040 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476519,627,442 - 19,737,408 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium 8 46
Low 28 20 14
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSCSAT00000006485   ⟹   ENSCSAP00000004692
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl21107,975,193 - 108,043,523 (+)Ensembl
RefSeq Acc Id: XM_007983112   ⟹   XP_007981303
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.121107,974,625 - 108,043,937 (+)NCBI
Vero_WHO_p1.0NW_0236660724,802,478 - 4,880,737 (+)NCBI
Sequence:
RefSeq Acc Id: XM_007983113   ⟹   XP_007981304
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.121107,974,623 - 108,043,937 (+)NCBI
Vero_WHO_p1.0NW_0236660724,802,478 - 4,880,737 (+)NCBI
Sequence:
RefSeq Acc Id: XM_007983114   ⟹   XP_007981305
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.121107,974,625 - 108,043,937 (+)NCBI
Vero_WHO_p1.0NW_0236660724,802,478 - 4,880,737 (+)NCBI
Sequence:
RefSeq Acc Id: XM_007983115   ⟹   XP_007981306
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.121107,974,622 - 108,043,937 (+)NCBI
Vero_WHO_p1.0NW_0236660724,802,477 - 4,880,737 (+)NCBI
Sequence:
RefSeq Acc Id: XM_007983117   ⟹   XP_007981308
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.121107,974,623 - 108,054,081 (+)NCBI
Vero_WHO_p1.0NW_0236660724,802,478 - 4,880,737 (+)NCBI
Sequence:
RefSeq Acc Id: XM_007983118   ⟹   XP_007981309
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.121107,974,621 - 108,075,403 (+)NCBI
Vero_WHO_p1.0NW_0236660724,802,478 - 4,902,105 (+)NCBI
Sequence:
RefSeq Acc Id: XM_007983120   ⟹   XP_007981311
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.121107,976,019 - 108,043,937 (+)NCBI
Vero_WHO_p1.0NW_0236660724,803,230 - 4,880,737 (+)NCBI
Sequence:
RefSeq Acc Id: XM_037991155   ⟹   XP_037847083
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_0236660724,802,477 - 4,880,737 (+)NCBI
RefSeq Acc Id: XR_005238155
Type: NON-CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_0236660724,802,478 - 4,880,737 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_007981309   ⟸   XM_007983118
- Peptide Label: isoform X7
RefSeq Acc Id: XP_007981306   ⟸   XM_007983115
- Peptide Label: isoform X4
RefSeq Acc Id: XP_007981308   ⟸   XM_007983117
- Peptide Label: isoform X6
RefSeq Acc Id: XP_007981304   ⟸   XM_007983113
- Peptide Label: isoform X2
RefSeq Acc Id: XP_007981303   ⟸   XM_007983112
- Peptide Label: isoform X1
RefSeq Acc Id: XP_007981305   ⟸   XM_007983114
- Peptide Label: isoform X3
RefSeq Acc Id: XP_007981311   ⟸   XM_007983120
- Peptide Label: isoform X8
- UniProtKB: A0A0D9R7V3 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCSAP00000004692   ⟸   ENSCSAT00000006485
RefSeq Acc Id: XP_037847083   ⟸   XM_037991155
- Peptide Label: isoform X5


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000008431 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000006485.1 UniProtKB/TrEMBL
InterPro HRD UniProtKB/TrEMBL
  UBN_middle_dom UniProtKB/TrEMBL
NCBI Gene UBN2 ENTREZGENE
PANTHER CAPZ-INTERACTING PROTEIN AND RELATED PROTEINS UniProtKB/TrEMBL
  PTHR21669:SF10 UniProtKB/TrEMBL
Pfam HUN UniProtKB/TrEMBL
  UBN_AB UniProtKB/TrEMBL
UniProt A0A0D9R7V3 ENTREZGENE, UniProtKB/TrEMBL