SELENOH (selenoprotein H) - Rat Genome Database

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Gene: SELENOH (selenoprotein H) Chlorocebus sabaeus
Analyze
Symbol: SELENOH
Name: selenoprotein H
RGD ID: 18765119
Description: ASSOCIATED WITH colorectal adenoma (ortholog); colorectal carcinoma (ortholog); intellectual disability (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: C1H11orf31
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1115,487,429 - 15,489,066 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666038112,838,788 - 112,840,830 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
SELENOH
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1115,487,429 - 15,489,066 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666038112,838,788 - 112,840,830 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
SELENOH
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381157,741,491 - 57,743,550 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1157,741,491 - 57,743,554 (+)EnsemblGRCh38hg38GRCh38
GRCh371157,508,963 - 57,511,022 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361157,265,298 - 57,267,459 (+)NCBINCBI36Build 36hg18NCBI36
Build 341157,265,297 - 57,267,459NCBI
Celera1154,865,438 - 54,867,599 (+)NCBICelera
Cytogenetic Map11q12.1NCBI
HuRef1153,857,356 - 53,859,517 (+)NCBIHuRef
CHM1_11157,375,759 - 57,377,920 (+)NCBICHM1_1
T2T-CHM13v2.01157,691,821 - 57,693,880 (+)NCBIT2T-CHM13v2.0
Selenoh
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39284,499,559 - 84,501,052 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl284,499,559 - 84,501,114 (-)EnsemblGRCm39 Ensembl
GRCm38284,669,215 - 84,670,708 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl284,669,215 - 84,670,770 (-)EnsemblGRCm38mm10GRCm38
MGSCv37284,509,378 - 84,510,865 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36284,470,060 - 84,471,547 (-)NCBIMGSCv36mm8
Celera286,264,153 - 86,265,640 (-)NCBICelera
Cytogenetic Map2DNCBI
cM Map249.45NCBI
Selenoh
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8390,158,541 - 90,160,108 (-)NCBIGRCr8
mRatBN7.2369,751,850 - 69,753,417 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl369,752,757 - 69,753,417 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx373,133,577 - 73,135,141 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0381,732,240 - 81,733,804 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0379,491,232 - 79,492,798 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0372,070,342 - 72,071,909 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl372,070,390 - 72,071,895 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0378,591,030 - 78,592,541 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4367,877,681 - 67,879,192 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera369,107,533 - 69,109,100 (-)NCBICelera
Cytogenetic Map3q24NCBI
SELENOH
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2958,895,561 - 58,897,289 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11159,915,654 - 59,917,265 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01152,980,128 - 52,981,759 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11156,449,762 - 56,451,465 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1156,450,023 - 56,450,642 (+)Ensemblpanpan1.1panPan2
SELENOH
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11838,478,750 - 38,480,347 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1838,025,749 - 38,027,356 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01839,160,640 - 39,162,238 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.11838,743,813 - 38,745,420 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01838,316,966 - 38,318,573 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01838,947,476 - 38,949,083 (-)NCBIUU_Cfam_GSD_1.0
Selenoh
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494714,702,054 - 14,704,667 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049365814,815,853 - 4,818,351 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SELENOH
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl213,228,312 - 13,230,076 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1213,229,296 - 13,229,879 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2212,862,307 - 12,862,890 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Selenoh
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248643,014,722 - 3,016,311 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_007998159 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JACDXN010000006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_007998159   ⟹   XP_007996350
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1115,487,429 - 15,489,066 (-)NCBI
Vero_WHO_p1.0NW_023666038112,838,788 - 112,840,830 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_007996350 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_007996350   ⟸   XM_007998159


Additional Information

Database Acc Id Source(s)
NCBI Gene SELENOH ENTREZGENE