Gene: OAF (out at first homolog) Chlorocebus sabaeus |
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Analyze |
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Symbol: |
OAF |
Name: |
out at first homolog |
RGD ID: |
18763835 |
Description: |
ASSOCIATED WITH CD3epsilon deficiency (ortholog); Chromosome 11, Partial Trisomy 11q (ortholog); Dwarfism (ortholog) |
Type: |
protein-coding
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RefSeq Status: |
MODEL |
Previously known as: |
out at first protein homolog |
RGD Orthologs |
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Alliance Genes |
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More Info |
more info ...
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More Info |
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Latest Assembly: |
ChlSab1.1 - Green Monkey 1.1 Assembly |
Position: |
Green Monkey Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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ChlSab1.1 | 1 | 111,614,890 - 111,634,309 (+) | NCBI | ChlSab1.1 | ChlSab1.1 | chlSab2 | | ChlSab1.1 Ensembl | 1 | 111,615,001 - 111,638,431 (+) | Ensembl | ChlSab1.1 | ChlSab1.1 Ensembl | chlSab2 | | Vero_WHO_p1.0 | NW_023666043 | 14,425,828 - 14,444,899 (-) | NCBI | Vero_WHO_p1.0 | Vero_WHO_p1.0 | | |
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JBrowse: |
View Region in Genome Browser (JBrowse)
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Model |
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Imported Disease Annotations - ClinVar
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References
Genomics
Comparative Map Data
OAF (Chlorocebus sabaeus - green monkey) |
Green Monkey Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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ChlSab1.1 | 1 | 111,614,890 - 111,634,309 (+) | NCBI | ChlSab1.1 | ChlSab1.1 | chlSab2 | | ChlSab1.1 Ensembl | 1 | 111,615,001 - 111,638,431 (+) | Ensembl | ChlSab1.1 | ChlSab1.1 Ensembl | chlSab2 | | Vero_WHO_p1.0 | NW_023666043 | 14,425,828 - 14,444,899 (-) | NCBI | Vero_WHO_p1.0 | Vero_WHO_p1.0 | | |
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OAF (Homo sapiens - human) |
Human Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCh38 | 11 | 120,211,032 - 120,230,334 (+) | NCBI | GRCh38 | GRCh38 | hg38 | GRCh38 | GRCh38.p14 Ensembl | 11 | 120,211,032 - 120,230,334 (+) | Ensembl | GRCh38 | | hg38 | GRCh38 | GRCh37 | 11 | 120,081,740 - 120,101,043 (+) | NCBI | GRCh37 | GRCh37 | hg19 | GRCh37 | Build 36 | 11 | 119,586,957 - 119,605,860 (+) | NCBI | NCBI36 | Build 36 | hg18 | NCBI36 | Celera | 11 | 117,239,997 - 117,258,863 (+) | NCBI | | Celera | | | Cytogenetic Map | 11 | q23.3 | NCBI | | | | | HuRef | 11 | 116,021,485 - 116,040,231 (+) | NCBI | | HuRef | | | CHM1_1 | 11 | 119,969,201 - 119,988,096 (+) | NCBI | | CHM1_1 | | | T2T-CHM13v2.0 | 11 | 120,233,870 - 120,253,135 (+) | NCBI | | T2T-CHM13v2.0 | | |
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Oaf (Mus musculus - house mouse) |
Mouse Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCm39 | 9 | 43,132,575 - 43,151,113 (-) | NCBI | GRCm39 | GRCm39 | mm39 | | GRCm39 Ensembl | 9 | 43,132,532 - 43,151,208 (-) | Ensembl | | GRCm39 Ensembl | | | GRCm38 | 9 | 43,221,278 - 43,239,816 (-) | NCBI | GRCm38 | GRCm38 | mm10 | GRCm38 | GRCm38.p6 Ensembl | 9 | 43,221,235 - 43,239,911 (-) | Ensembl | GRCm38 | | mm10 | GRCm38 | MGSCv37 | 9 | 43,029,361 - 43,047,899 (-) | NCBI | GRCm37 | MGSCv37 | mm9 | NCBIm37 | MGSCv36 | 9 | 42,972,273 - 42,990,811 (-) | NCBI | | MGSCv36 | mm8 | | Celera | 9 | 40,474,322 - 40,492,817 (-) | NCBI | | Celera | | | Cytogenetic Map | 9 | A5.1 | NCBI | | | | | cM Map | 9 | 24.24 | NCBI | | | | |
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Oaf (Rattus norvegicus - Norway rat) |
Rat Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCr8 | 8 | 52,491,314 - 52,509,285 (-) | NCBI | | GRCr8 | | | mRatBN7.2 | 8 | 43,594,362 - 43,612,334 (-) | NCBI | mRatBN7.2 | mRatBN7.2 | | | mRatBN7.2 Ensembl | 8 | 43,594,363 - 43,612,334 (-) | Ensembl | | mRatBN7.2 Ensembl | | | UTH_Rnor_SHR_Utx | 8 | 49,092,153 - 49,110,146 (-) | NCBI | Rnor_SHR | UTH_Rnor_SHR_Utx | | | UTH_Rnor_SHRSP_BbbUtx_1.0 | 8 | 47,370,822 - 47,388,815 (-) | NCBI | Rnor_SHRSP | UTH_Rnor_SHRSP_BbbUtx_1.0 | | | UTH_Rnor_WKY_Bbb_1.0 | 8 | 45,238,440 - 45,256,433 (-) | NCBI | Rnor_WKY | UTH_Rnor_WKY_Bbb_1.0 | | | Rnor_6.0 | 8 | 47,511,718 - 47,529,689 (-) | NCBI | Rnor6.0 | Rnor_6.0 | rn6 | Rnor6.0 | Rnor_6.0 Ensembl | 8 | 47,511,719 - 47,529,689 (-) | Ensembl | Rnor6.0 | | rn6 | Rnor6.0 | Rnor_5.0 | 8 | 45,980,601 - 45,998,572 (-) | NCBI | Rnor5.0 | Rnor_5.0 | rn5 | Rnor5.0 | RGSC_v3.4 | 8 | 46,224,861 - 46,242,832 (-) | NCBI | RGSC3.4 | RGSC_v3.4 | rn4 | RGSC3.4 | RGSC_v3.1 | 8 | 46,233,627 - 46,251,598 (-) | NCBI | | | | | Celera | 8 | 43,184,283 - 43,202,190 (-) | NCBI | | Celera | | | Cytogenetic Map | 8 | q22 | NCBI | | | | |
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Oaf (Chinchilla lanigera - long-tailed chinchilla) |
Chinchilla Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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ChiLan1.0 Ensembl | NW_004955412 | 21,235,927 - 21,251,182 (+) | Ensembl | ChiLan1.0 | | | | ChiLan1.0 | NW_004955412 | 21,235,927 - 21,251,100 (+) | NCBI | ChiLan1.0 | ChiLan1.0 | | |
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OAF (Pan paniscus - bonobo/pygmy chimpanzee) |
Bonobo Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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NHGRI_mPanPan1-v2 | 9 | 120,912,578 - 120,931,955 (+) | NCBI | | NHGRI_mPanPan1-v2 | | | NHGRI_mPanPan1 | 11 | 122,016,468 - 122,035,657 (+) | NCBI | | NHGRI_mPanPan1 | | | Mhudiblu_PPA_v0 | 11 | 115,045,790 - 115,065,032 (+) | NCBI | Mhudiblu_PPA_v0 | Mhudiblu_PPA_v0 | panPan3 | | PanPan1.1 | 11 | 118,972,578 - 118,991,550 (+) | NCBI | panpan1.1 | PanPan1.1 | panPan2 | | PanPan1.1 Ensembl | 11 | 118,972,574 - 118,991,170 (+) | Ensembl | panpan1.1 | | panPan2 | |
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OAF (Canis lupus familiaris - dog) |
Dog Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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CanFam3.1 | 5 | 13,771,208 - 13,798,387 (-) | NCBI | CanFam3.1 | CanFam3.1 | canFam3 | CanFam3.1 | CanFam3.1 Ensembl | 5 | 13,771,659 - 13,783,190 (-) | Ensembl | CanFam3.1 | | canFam3 | CanFam3.1 | Dog10K_Boxer_Tasha | 5 | 13,826,247 - 13,842,926 (-) | NCBI | | Dog10K_Boxer_Tasha | | | ROS_Cfam_1.0 | 5 | 13,717,188 - 13,733,860 (-) | NCBI | | ROS_Cfam_1.0 | | | ROS_Cfam_1.0 Ensembl | 5 | 13,717,197 - 13,734,236 (-) | Ensembl | | ROS_Cfam_1.0 Ensembl | | | UMICH_Zoey_3.1 | 5 | 13,854,790 - 13,871,452 (-) | NCBI | | UMICH_Zoey_3.1 | | | UNSW_CanFamBas_1.0 | 5 | 13,758,765 - 13,785,700 (-) | NCBI | | UNSW_CanFamBas_1.0 | | | UU_Cfam_GSD_1.0 | 5 | 13,797,892 - 13,814,560 (-) | NCBI | | UU_Cfam_GSD_1.0 | | |
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Oaf (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
Squirrel Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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HiC_Itri_2 | NW_024404947 | 102,149,586 - 102,166,267 (+) | NCBI | | HiC_Itri_2 | | | SpeTri2.0 Ensembl | NW_004936542 | 5,070,468 - 5,091,298 (+) | Ensembl | SpeTri2.0 | SpeTri2.0 Ensembl | | | SpeTri2.0 | NW_004936542 | 5,070,995 - 5,087,676 (+) | NCBI | SpeTri2.0 | SpeTri2.0 | | SpeTri2.0 |
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OAF (Sus scrofa - pig) |
Pig Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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Sscrofa11.1 Ensembl | 9 | 47,345,165 - 47,362,998 (+) | Ensembl | Sscrofa11.1 | | susScr11 | Sscrofa11.1 | Sscrofa11.1 | 9 | 47,344,916 - 47,363,768 (+) | NCBI | Sscrofa11.1 | Sscrofa11.1 | susScr11 | Sscrofa11.1 | Sscrofa10.2 | 9 | 52,413,284 - 52,431,295 (+) | NCBI | Sscrofa10.2 | Sscrofa10.2 | susScr3 | |
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Oaf (Heterocephalus glaber - naked mole-rat) |
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Expression
RNA-SEQ Expression
High: > 1000 TPM value
Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM
Below Cutoff: < 0.5 TPM
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endocrine system |
hemolymphoid system |
nervous system |
High |
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Medium |
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6
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Low |
36
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16
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54
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Below cutoff |
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4
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Sequence
RefSeq Acc Id: |
ENSCSAT00000000497 ⟹ ENSCSAP00000015564 |
Type: |
CODING |
Position: |
Green Monkey Assembly | Chr | Position (strand) | Source |
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ChlSab1.1 Ensembl | 1 | 111,615,001 - 111,638,431 (+) | Ensembl |
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RefSeq Acc Id: |
XM_008021209 ⟹ XP_008019400 |
Type: |
CODING |
Position: |
Green Monkey Assembly | Chr | Position (strand) | Source |
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ChlSab1.1 | 1 | 111,614,890 - 111,634,309 (+) | NCBI | Vero_WHO_p1.0 | NW_023666043 | 14,425,828 - 14,444,899 (-) | NCBI |
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Sequence: |
CAAACTTCTGACACCGCCTGGGCCGCTGACTCCGCGCGGCCGGGAGGGAGGGAGATCGAGGACG CCGCTCGCACAAAGCCGCGGAGCCGCGGCCCCCTCTCCCCGCCCCCTGCCCGGCCAACGCCGGA GCGCGGGGAGCAGCCGCGGGCCCTTTAAGGGCCGCGAGGTGCGCGGTCTCTTTAAGGCGGGTCC TGGTGGTTTCTGTTTTCTGAAGGAAGTGACGGGGGGTGGGATTGAATGAAAAGTGCAAAACACA GGCTCGCAGCGCCGGAGCCCGGGGCCGCGGAGCCGGGCCGGGGCAGCGTCGTCTCCGCCTCGGG GCCTCCGGGGGCGCGCTGCCGAGCGCTACCCACGTGCGTTCGTGCCACCTCGCGGGCGACCCCG CGGCCAAGGCCCCGAGCGGAGCGGCTCCGGAGCGCCCCGAACTAGCCCCCAACTTTGGGCGAAG TTTGCCTACGCCTCTCCCCGCCCCCACGCGGCGCGCCGGGGCCGCGGACTGCAGTGGCTCCCGG GGATGCGCCTTCCCGGGGTCCCCCCGGCGCTCCCCGCGCTGTTGCTCCTGCTGCCGCTGCTCGC GCCGCTGCTGGGAACGGGTGCGCCGGCCGAGCTGCGGGTCCGCGTGCGGCTGCCGGACGGCCAG GTGACCGAGGAGAGCCTGCAGGCGGACAGCGACGCCGACAGCATCAGCCTCGAGCTGCGCAAGC CCGACGGCACCCTTGTCTCCTTCACCGCCGACTTCAAGAAGGATGTGAAGATCTTCCGGGCCCT GATCCTAGGGGAGCTGGAGAAGGGGCAGAGTCAGTTCCAGGCCCTCTGCTTTGTCACCCAGCTG CAGCACAATGAGATCATCCCCAGTGAGGCCATGGCCAAGCTCCGGCAGAAAAATCCCCGGGCAG TGCGGCAGGCGGAGGAGGTTCGGGGTCTGGAGCATCTGCACATGGATGTCGCTGTCAACTTCAG CCAGGGGGCCCTGCTGAGCCCCCATCTCCACAACGTGTGTGCTGAGGCCGTGGATGCCATCTTC ACCCGCCAGGAGGACGTCCGGTTCTGGCTGGAGCAAGGTGTGGACAGTTCTGTGTTTGAGGCTC TGCCCAAGGCCTCAGAGCAGGTGGAGCTGCCTCGCTGTGGGCAGGTGGGAGATCGCGGGAAGCC CTGTGTCTGCCGCTATGGCCTGAGCCTGGCCTGGTACCCCTGCATGCTCAAGTACTGCCACAGC CGCGACCGGCCCACACCCTACAAGTGTGGCATCCGCAGCTGCCAGAAGAGCTACAGCTTCGACT TCTACGTGCCCCAGAGGCAGCTGTGTCTCTGGGATGAGGACCCCTAGCCAGGCTAGGGTGGGAG GGACCTGGAGGGTGGCTGCTCTGGGCCCACTGCTCTTCACCAGCCACTAGAGGGGGTGGCATCC CCCACCTGAGGCCTTATTTCTCTCCCTCCCCACTCCCCTGGCCCTGGAGCCTGGACCCCTCTGG CCCCATCACAGATGACTGTGAAAGGGGTGTGGCGTGGCAGGGGGGTCTCATGAAGGCACCCCCA CTCCCACCCTGTGCCTTCCTTATGGGCAGAGAGGGAGAGAGGGACTCCCCAGGTCTACACCCCT CCCTCCTGCATCTCCCCTGGAGTGTTCACTTGCAAGCCACCAAAATGTGATGGCCTGTGGTTCT TCTGCTGAGCTCCTTAAATGTTTAGACCCTGAAAGGAGTCTACAGCTGGACACCCCCCTCCCCA GACACAACTGCCTTCCCCACGCACACATCTGGAAGGAGCTGGCCCCTCAGTGCCTTCCTACTCC CCAACATGGGGCTCACCATCCCCAAAGAAGGAGCTGTTGGGGACCCACGATGCAGCCCCTGTCC CGGATTACAGCGAGTTCTCATTTCTGGCTCTGAGGCTGCCTGTGGGGCGAGTGAAGACCTCCCA CCGCTGAGACAGACCACAGACCACAGACCACGAGTGCCTTTCCCAGACACCTGGACGTTGCCTC CCAGAGCAGGCCCCAGCTCTTTCCCTCTCTATACAGAAATATTTTTGTAAGGTTCTGGGGCAGG GAGGGAGCATGAAGTATGAGGAAAACTTGAATTCCAGATTTTTAATGCAAAGTATTTATCATTT CTACCAGAAATAAACGTTTTAAGTTTTTATTTGGCAAGA
hide sequence
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RefSeq Acc Id: |
XP_008019400 ⟸ XM_008021209 |
- UniProtKB: |
A0A0D9S3X5 (UniProtKB/TrEMBL) |
RefSeq Acc Id: |
ENSCSAP00000015564 ⟸ ENSCSAT00000000497 |
Additional Information
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