CEP104 (centrosomal protein 104) - Rat Genome Database

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Gene: CEP104 (centrosomal protein 104) Chlorocebus sabaeus
Analyze
Symbol: CEP104
Name: centrosomal protein 104
RGD ID: 18763710
Description: ENCODES a protein that exhibits glutamate binding (ortholog); glycine binding (ortholog); thienylcyclohexylpiperidine binding (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); autosomal recessive intellectual developmental disorder 77 (ortholog); cerebellar ataxia (ortholog); FOUND IN centriole (inferred); cilium (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: centrosomal protein of 104 kDa
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.120127,823,789 - 127,866,172 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl20127,828,995 - 127,865,544 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605432,025,707 - 32,077,919 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
centriole  (IEA)
cilium  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
CEP104
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.120127,823,789 - 127,866,172 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl20127,828,995 - 127,865,544 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605432,025,707 - 32,077,919 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
CEP104
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3813,812,086 - 3,857,211 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl13,812,086 - 3,857,396 (-)EnsemblGRCh38hg38GRCh38
GRCh3713,728,650 - 3,773,775 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3613,721,204 - 3,763,657 (-)NCBINCBI36Build 36hg18NCBI36
Celera12,982,705 - 3,023,114 (-)NCBICelera
Cytogenetic Map1p36.32NCBI
HuRef13,024,327 - 3,069,355 (-)NCBIHuRef
CHM1_113,715,664 - 3,760,800 (-)NCBICHM1_1
T2T-CHM13v2.013,323,682 - 3,368,809 (-)NCBIT2T-CHM13v2.0
Cep104
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394154,059,649 - 154,093,189 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4154,059,651 - 154,093,189 (+)EnsemblGRCm39 Ensembl
GRCm384153,975,126 - 154,008,732 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4153,975,194 - 154,008,732 (+)EnsemblGRCm38mm10GRCm38
MGSCv374153,349,670 - 153,381,334 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364152,819,361 - 152,851,025 (+)NCBIMGSCv36mm8
Celera4156,263,741 - 156,294,655 (+)NCBICelera
Cytogenetic Map4E2NCBI
cM Map483.78NCBI
Cep104
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85169,817,383 - 169,849,681 (+)NCBIGRCr8
mRatBN7.25164,534,773 - 164,567,260 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5164,534,782 - 164,567,248 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5167,239,067 - 167,271,356 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05169,060,477 - 169,092,766 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05169,022,925 - 169,055,214 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05171,262,278 - 171,294,560 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5171,262,278 - 171,294,559 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05174,753,900 - 174,786,095 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45170,762,437 - 170,793,899 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.15170,785,668 - 170,805,838 (+)NCBI
Celera5162,746,921 - 162,779,233 (+)NCBICelera
Cytogenetic Map5q36NCBI
Cep104
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554867,853,641 - 7,876,047 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554867,849,921 - 7,877,598 (+)NCBIChiLan1.0ChiLan1.0
CEP104
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21224,450,603 - 224,493,855 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11223,094,319 - 223,137,899 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v012,485,711 - 2,529,745 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.113,607,940 - 3,649,450 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl13,606,659 - 3,648,832 (-)Ensemblpanpan1.1panPan2
CEP104
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1558,301,767 - 58,339,920 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl558,305,589 - 58,335,438 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha558,312,060 - 58,350,211 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0558,509,183 - 58,547,344 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl558,511,699 - 58,547,609 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1558,516,904 - 58,555,051 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0558,385,797 - 58,423,948 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0558,776,065 - 58,814,220 (-)NCBIUU_Cfam_GSD_1.0
Cep104
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505829,338,027 - 29,369,250 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493673798,365 - 129,671 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493673798,346 - 127,932 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CEP104
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl665,274,488 - 65,310,669 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1665,274,092 - 65,310,735 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2660,132,912 - 60,157,253 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Cep104
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248186,716,695 - 6,737,883 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248186,712,616 - 6,737,377 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium 31 57
Low 5 20 3
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSCSAT00000017807   ⟹   ENSCSAP00000017279
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl20127,828,995 - 127,865,544 (+)Ensembl
RefSeq Acc Id: XM_007980840   ⟹   XP_007979031
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.120127,823,789 - 127,866,172 (+)NCBI
Vero_WHO_p1.0NW_02366605432,025,707 - 32,077,389 (+)NCBI
Sequence:
RefSeq Acc Id: XM_037985137   ⟹   XP_037841065
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366605432,030,887 - 32,077,919 (+)NCBI
Protein Sequences
Protein RefSeqs XP_007979031 (Get FASTA)   NCBI Sequence Viewer  
  XP_037841065 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000017279.1
Reference Protein Sequences
RefSeq Acc Id: XP_007979031   ⟸   XM_007980840
- UniProtKB: A0A0D9S8U0 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCSAP00000017279   ⟸   ENSCSAT00000017807
RefSeq Acc Id: XP_037841065   ⟸   XM_037985137
- UniProtKB: A0A0D9S8U0 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000000728 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000017807.1 UniProtKB/TrEMBL
Gene3D-CATH 1.25.10.10 UniProtKB/TrEMBL
InterPro ARM-like UniProtKB/TrEMBL
  ARM-type_fold UniProtKB/TrEMBL
  CEP104_N UniProtKB/TrEMBL
  CEP104_Znf UniProtKB/TrEMBL
  Galactose-bd-like_sf UniProtKB/TrEMBL
  TOG UniProtKB/TrEMBL
KEGG Report csab:103225720 UniProtKB/TrEMBL
NCBI Gene CEP104 ENTREZGENE
PANTHER CENTROSOMAL PROTEIN OF 104 KDA UniProtKB/TrEMBL
  GLYCINE-, GLUTAMATE-, THIENYLCYCLOHEXYLPIPERIDINE-BINDING PROTEIN UniProtKB/TrEMBL
Pfam CEP104-like_TOG UniProtKB/TrEMBL
  CEP104_N UniProtKB/TrEMBL
  CEP104_ZnF UniProtKB/TrEMBL
SMART TOG UniProtKB/TrEMBL
Superfamily-SCOP SSF48371 UniProtKB/TrEMBL
  SSF49785 UniProtKB/TrEMBL
UniProt A0A0D9S8U0 ENTREZGENE, UniProtKB/TrEMBL