MGAT3 (beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase) - Rat Genome Database

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Gene: MGAT3 (beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase) Chlorocebus sabaeus
Analyze
Symbol: MGAT3
Name: beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase
RGD ID: 18763099
Description: ENCODES a protein that exhibits beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity (inferred); glycosyltransferase activity (inferred); INVOLVED IN amyloid-beta metabolic process (ortholog); cellular response to oxidative stress (ortholog); cognition (ortholog); PARTICIPATES IN E-cadherin signaling pathway; ASSOCIATED WITH adenylosuccinase lyase deficiency (ortholog); genetic disease (ortholog); FOUND IN membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: mannosyl (beta-1,4-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11922,019,351 - 22,065,551 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1922,060,736 - 22,062,337 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666045103,587,311 - 103,624,054 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
membrane  (IEA)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
MGAT3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11922,019,351 - 22,065,551 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1922,060,736 - 22,062,337 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666045103,587,311 - 103,624,054 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
MGAT3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382239,457,012 - 39,492,194 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2239,457,012 - 39,492,194 (+)EnsemblGRCh38hg38GRCh38
GRCh372239,853,017 - 39,888,199 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362238,183,271 - 38,218,145 (+)NCBINCBI36Build 36hg18NCBI36
Build 342238,177,824 - 38,209,939NCBI
Celera2223,655,378 - 23,690,243 (+)NCBICelera
Cytogenetic Map22q13.1NCBI
HuRef2222,847,758 - 22,852,697 (+)NCBIHuRef
CHM1_12239,812,132 - 39,846,938 (+)NCBICHM1_1
T2T-CHM13v2.02239,927,644 - 39,962,814 (+)NCBIT2T-CHM13v2.0
Mgat3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391580,057,852 - 80,099,720 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1580,057,922 - 80,099,720 (+)EnsemblGRCm39 Ensembl
GRCm381580,173,651 - 80,215,519 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1580,173,721 - 80,215,519 (+)EnsemblGRCm38mm10GRCm38
MGSCv371580,004,151 - 80,045,949 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361580,001,066 - 80,042,774 (+)NCBIMGSCv36mm8
Celera1582,329,172 - 82,333,729 (+)NCBICelera
Cytogenetic Map15E1NCBI
cM Map1537.85NCBI
Mgat3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87113,614,011 - 113,640,201 (+)NCBIGRCr8
mRatBN7.27111,708,353 - 111,761,825 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7111,675,730 - 111,762,026 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx7113,488,109 - 113,514,341 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07115,711,653 - 115,737,884 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07115,681,009 - 115,707,241 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.07121,394,541 - 121,436,935 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7121,408,829 - 121,435,022 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07121,375,145 - 121,426,932 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47118,429,750 - 118,457,125 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.17118,463,979 - 118,491,351 (+)NCBI
Celera7108,062,223 - 108,088,293 (+)NCBICelera
Cytogenetic Map7q34NCBI
Mgat3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541325,360,806 - 25,367,782 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541325,346,135 - 25,367,782 (+)NCBIChiLan1.0ChiLan1.0
MGAT3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22349,304,610 - 49,339,435 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12251,995,998 - 52,030,835 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02220,363,244 - 20,398,471 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12238,194,445 - 38,218,881 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2238,214,029 - 38,215,630 (+)Ensemblpanpan1.1panPan2
MGAT3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11025,564,825 - 25,605,787 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1025,568,053 - 25,570,413 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1025,500,650 - 25,547,893 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01026,316,509 - 26,363,783 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.11026,031,065 - 26,078,462 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01026,350,607 - 26,397,843 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01026,526,372 - 26,573,605 (-)NCBIUU_Cfam_GSD_1.0
Mgat3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049459,134,358 - 9,177,078 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364922,144,732 - 2,186,871 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364922,144,775 - 2,149,344 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MGAT3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl58,777,965 - 8,807,100 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.158,777,964 - 8,807,144 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.256,080,556 - 6,092,563 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Mgat3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247528,859,596 - 8,891,440 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247528,859,809 - 8,891,344 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium 40
Low 23 20 20
Below cutoff 13

Sequence


Reference Sequences
RefSeq Acc Id: ENSCSAT00000019370   ⟹   ENSCSAP00000018790
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl1922,060,736 - 22,062,337 (+)Ensembl
RefSeq Acc Id: XM_007975836   ⟹   XP_007974027
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11922,030,217 - 22,065,551 (+)NCBI
Vero_WHO_p1.0NW_023666045103,587,311 - 103,624,054 (-)NCBI
Sequence:
RefSeq Acc Id: XM_038007420   ⟹   XP_037863348
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_023666045103,587,311 - 103,613,530 (-)NCBI
Protein Sequences
Protein RefSeqs XP_007974027 (Get FASTA)   NCBI Sequence Viewer  
  XP_037863348 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000018790.1
Reference Protein Sequences
RefSeq Acc Id: XP_007974027   ⟸   XM_007975836
- Peptide Label: isoform X2
- UniProtKB: A0A0D9SD51 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCSAP00000018790   ⟸   ENSCSAT00000019370
RefSeq Acc Id: XP_037863348   ⟸   XM_038007420
- Peptide Label: isoform X1


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000019280 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000019370.1 UniProtKB/TrEMBL
InterPro Glyco_trans_17 UniProtKB/TrEMBL
KEGG Report csab:103223343 UniProtKB/TrEMBL
NCBI Gene MGAT3 ENTREZGENE
PANTHER BETA-1,4-MANNOSYL-GLYCOPROTEIN 4-BETA-N-ACETYLGLUCOSAMINYLTRANSFERASE UniProtKB/TrEMBL
  PTHR12224 UniProtKB/TrEMBL
Pfam Glyco_transf_17 UniProtKB/TrEMBL
UniProt A0A0D9SD51 ENTREZGENE, UniProtKB/TrEMBL