CYP51A1 (cytochrome P450 family 51 subfamily A member 1) - Rat Genome Database

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Gene: CYP51A1 (cytochrome P450 family 51 subfamily A member 1) Chlorocebus sabaeus
Analyze
Symbol: CYP51A1
Name: cytochrome P450 family 51 subfamily A member 1
RGD ID: 18759176
Description: ENCODES a protein that exhibits sterol 14-demethylase activity (ortholog); INVOLVED IN cholesterol biosynthetic process via 24,25-dihydrolanosterol (ortholog); negative regulation of amyloid-beta clearance (ortholog); negative regulation of protein catabolic process (ortholog); PARTICIPATES IN alendronate pharmacodynamics pathway; cholesterol biosynthetic pathway; cholesterol ester storage disease pathway; ASSOCIATED WITH Antley-Bixler syndrome (ortholog); cataract (ortholog); cerebral cavernous malformation (ortholog); FOUND IN acrosomal vesicle (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: lanosterol 14-alpha demethylase
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12156,865,498 - 56,888,196 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2156,865,312 - 56,886,698 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604247,377,473 - 47,400,184 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
CYP51A1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12156,865,498 - 56,888,196 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2156,865,312 - 56,886,698 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604247,377,473 - 47,400,184 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
CYP51A1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38792,112,153 - 92,134,803 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl792,084,987 - 92,134,803 (-)EnsemblGRCh38hg38GRCh38
GRCh37791,741,467 - 91,764,117 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36791,579,402 - 91,601,946 (-)NCBINCBI36Build 36hg18NCBI36
Build 34791,386,116 - 91,408,661NCBI
Celera786,446,011 - 86,468,618 (-)NCBICelera
Cytogenetic Map7q21.2NCBI
HuRef786,348,902 - 86,371,499 (-)NCBIHuRef
CHM1_1791,671,533 - 91,694,128 (-)NCBICHM1_1
T2T-CHM13v2.0793,353,434 - 93,376,082 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2791,070,701 - 91,093,297 (-)NCBI
Cyp51
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3954,130,674 - 4,154,697 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl54,131,145 - 4,154,746 (-)EnsemblGRCm39 Ensembl
GRCm3854,080,674 - 4,104,697 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl54,081,145 - 4,104,746 (-)EnsemblGRCm38mm10GRCm38
MGSCv3754,080,674 - 4,104,697 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3654,086,680 - 4,110,703 (-)NCBIMGSCv36mm8
Celera54,010,747 - 4,034,762 (-)NCBICelera
Cytogenetic Map5A1NCBI
cM Map52.3NCBI
Cyp51
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8430,991,693 - 31,010,147 (+)NCBIGRCr8
mRatBN7.2430,036,956 - 30,055,410 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl430,036,865 - 30,055,410 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx435,009,705 - 35,028,159 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0430,935,797 - 30,954,251 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0429,331,773 - 29,350,227 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0427,175,564 - 27,194,018 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl427,175,243 - 27,194,018 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0427,078,790 - 27,097,244 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4426,752,677 - 26,771,131 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1426,758,233 - 26,776,686 (+)NCBI
Celera425,462,810 - 25,481,264 (+)NCBICelera
Cytogenetic Map4q13NCBI
LOC102027002
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554329,092,933 - 9,112,615 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554329,092,923 - 9,112,615 (-)NCBIChiLan1.0ChiLan1.0
CYP51A1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26109,998,616 - 110,022,815 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan17158,262,334 - 158,287,365 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0784,110,130 - 84,132,870 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1797,708,806 - 97,730,486 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl797,708,806 - 97,729,824 (-)Ensemblpanpan1.1panPan2
CYP51A1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11417,746,654 - 17,767,019 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1417,746,656 - 17,766,658 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1417,307,241 - 17,328,397 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01417,552,569 - 17,573,808 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1417,550,375 - 17,573,565 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11417,710,915 - 17,732,068 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01417,425,396 - 17,446,546 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01417,699,282 - 17,720,469 (-)NCBIUU_Cfam_GSD_1.0
LOC101955024
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511831,136,259 - 31,159,424 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366212,209,199 - 2,232,531 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366212,209,255 - 2,232,404 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CYP51A1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl972,057,511 - 72,079,444 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1972,057,506 - 72,079,587 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2978,792,905 - 78,814,951 (-)NCBISscrofa10.2Sscrofa10.2susScr3
LOC101724157
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248091,080,656 - 1,100,254 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248091,080,427 - 1,110,802 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium 36 1 60
Low 19
Below cutoff

Sequence


RefSeq Acc Id: ENSCSAT00000010644   ⟹   ENSCSAP00000008733
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl2156,865,312 - 56,886,698 (+)Ensembl
RefSeq Acc Id: XM_007982191   ⟹   XP_007980382
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.12156,865,612 - 56,888,196 (+)NCBI
Vero_WHO_p1.0NW_02366604247,377,473 - 47,400,068 (-)NCBI
Sequence:
RefSeq Acc Id: XM_007982192   ⟹   XP_007980383
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.12156,865,498 - 56,886,892 (+)NCBI
Vero_WHO_p1.0NW_02366604247,378,865 - 47,400,184 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_007980382 (Get FASTA)   NCBI Sequence Viewer  
  XP_007980383 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000008733
  ENSCSAP00000008733.1
RefSeq Acc Id: XP_007980383   ⟸   XM_007982192
- Peptide Label: isoform X2
RefSeq Acc Id: XP_007980382   ⟸   XM_007982191
- Peptide Label: isoform X1
- UniProtKB: A0A0D9RJE4 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCSAP00000008733   ⟸   ENSCSAT00000010644


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000012548 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000010644.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.630.10 UniProtKB/TrEMBL
InterPro Cyt_P450 UniProtKB/TrEMBL
  Cyt_P450_CS UniProtKB/TrEMBL
  Cyt_P450_E_grp-IV UniProtKB/TrEMBL
  Cyt_P450_sf UniProtKB/TrEMBL
KEGG Report csab:103226567 UniProtKB/TrEMBL
NCBI Gene CYP51A1 ENTREZGENE
PANTHER 24-HYDROXYCHOLESTEROL 7-ALPHA-HYDROXYLASE UniProtKB/TrEMBL
  CYTOCHROME P450 FAMILY 7 UniProtKB/TrEMBL
Pfam p450 UniProtKB/TrEMBL
PRINTS EP450IV UniProtKB/TrEMBL
  P450 UniProtKB/TrEMBL
PROSITE CYTOCHROME_P450 UniProtKB/TrEMBL
Superfamily-SCOP SSF48264 UniProtKB/TrEMBL
UniProt A0A0D9RJE4 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:83416 ENTREZGENE