THSD7A (thrombospondin type 1 domain containing 7A) - Rat Genome Database

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Gene: THSD7A (thrombospondin type 1 domain containing 7A) Chlorocebus sabaeus
Analyze
Symbol: THSD7A
Name: thrombospondin type 1 domain containing 7A
RGD ID: 18758211
Description: INVOLVED IN actin cytoskeleton organization (inferred); ASSOCIATED WITH bipolar disorder (ortholog); FOUND IN podocyte foot (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: thrombospondin type-1 domain-containing protein 7A
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12146,312,799 - 46,802,002 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2146,518,101 - 46,796,607 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604257,645,679 - 58,139,124 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
THSD7A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12146,312,799 - 46,802,002 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2146,518,101 - 46,796,607 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604257,645,679 - 58,139,124 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
THSD7A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38711,370,365 - 11,832,198 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl711,370,365 - 11,832,198 (-)EnsemblGRCh38hg38GRCh38
GRCh37711,409,992 - 11,871,824 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36711,380,695 - 11,838,349 (-)NCBINCBI36Build 36hg18NCBI36
Celera711,384,846 - 11,846,544 (-)NCBICelera
Cytogenetic Map7p21.3NCBI
HuRef711,268,321 - 11,729,851 (-)NCBIHuRef
CHM1_1711,410,667 - 11,872,448 (-)NCBICHM1_1
T2T-CHM13v2.0711,501,328 - 11,963,096 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2711,463,461 - 11,925,090 (-)NCBI
Thsd7a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39612,311,607 - 12,749,252 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl612,311,609 - 12,749,409 (-)EnsemblGRCm39 Ensembl
GRCm38612,311,608 - 12,749,253 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl612,311,610 - 12,749,410 (-)EnsemblGRCm38mm10GRCm38
MGSCv37612,261,608 - 12,699,253 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36612,266,188 - 12,369,363 (-)NCBIMGSCv36mm8
Celera612,410,903 - 12,846,978 (-)NCBICelera
Cytogenetic Map6A1NCBI
cM Map65.31NCBI
Thsd7a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8441,427,276 - 41,865,524 (-)NCBIGRCr8
mRatBN7.2440,461,124 - 40,899,345 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl440,460,814 - 40,899,583 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx445,419,542 - 45,860,696 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0441,345,675 - 41,786,802 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0439,749,295 - 40,190,421 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0438,658,512 - 39,103,411 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl438,664,066 - 39,102,807 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0438,500,796 - 38,938,890 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4437,617,357 - 38,060,371 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera435,850,758 - 36,285,135 (-)NCBICelera
Cytogenetic Map4q21NCBI
Thsd7a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543217,901,693 - 18,111,901 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495543217,896,273 - 18,111,903 (-)NCBIChiLan1.0ChiLan1.0
THSD7A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2616,200,112 - 16,675,029 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1764,524,829 - 64,999,740 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0712,024,080 - 12,498,856 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1711,370,715 - 11,843,379 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl711,376,048 - 11,652,504 (-)Ensemblpanpan1.1panPan2
THSD7A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11426,344,342 - 26,769,727 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1426,349,465 - 26,769,457 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1425,860,426 - 26,285,019 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01426,151,271 - 26,576,848 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1426,156,399 - 26,576,605 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11426,320,825 - 26,748,226 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01426,054,356 - 26,479,356 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01426,303,891 - 26,732,300 (-)NCBIUU_Cfam_GSD_1.0
Thsd7a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511839,824,019 - 40,542,413 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936761948,564 - 1,180,351 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936761947,445 - 1,336,541 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
THSD7A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl981,076,091 - 81,518,344 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1981,071,840 - 81,518,200 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2989,069,461 - 89,309,422 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Thsd7a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248277,620,672 - 7,896,923 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248277,444,535 - 7,898,557 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression

ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
reproductive system
76 36 18 34 34 60 20

Sequence


Ensembl Acc Id: ENSCSAT00000011373   ⟹   ENSCSAP00000009446
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl2146,518,101 - 46,796,607 (+)Ensembl
RefSeq Acc Id: XM_007982032   ⟹   XP_007980223
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.12146,312,803 - 46,802,002 (+)NCBI
Vero_WHO_p1.0NW_02366604257,645,679 - 58,139,124 (-)NCBI
Sequence:
RefSeq Acc Id: XM_007982034   ⟹   XP_007980225
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.12146,312,802 - 46,797,903 (+)NCBI
Vero_WHO_p1.0NW_02366604257,645,679 - 58,139,124 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_007980223 (Get FASTA)   NCBI Sequence Viewer  
  XP_007980225 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000009446.1
RefSeq Acc Id: XP_007980225   ⟸   XM_007982034
- Peptide Label: isoform X2
- UniProtKB: A0A0D9RLF7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_007980223   ⟸   XM_007982032
- Peptide Label: isoform X1
- UniProtKB: A0A0D9RLF7 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCSAP00000009446   ⟸   ENSCSAT00000011373


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000013288 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000011373.1 UniProtKB/TrEMBL
Gene3D-CATH 2.20.100.10 UniProtKB/TrEMBL
InterPro Spondin/Thrombospondin_T1 UniProtKB/TrEMBL
  TSP1_rpt UniProtKB/TrEMBL
  TSP1_rpt_sf UniProtKB/TrEMBL
  TSP1_spondin_dom UniProtKB/TrEMBL
NCBI Gene THSD7A ENTREZGENE
PANTHER SPONDIN UniProtKB/TrEMBL
  THROMBOSPONDIN TYPE-1 DOMAIN-CONTAINING PROTEIN 7A UniProtKB/TrEMBL
Pfam TSP1_ADAMTS UniProtKB/TrEMBL
  TSP1_spondin UniProtKB/TrEMBL
  TSP_1 UniProtKB/TrEMBL
PROSITE TSP1 UniProtKB/TrEMBL
SMART TSP1 UniProtKB/TrEMBL
Superfamily-SCOP SSF82895 UniProtKB/TrEMBL
UniProt A0A0D9RLF7 ENTREZGENE, UniProtKB/TrEMBL