BHLHA9 (basic helix-loop-helix family member a9)

Gene: BHLHA9 (basic helix-loop-helix family member a9) Chlorocebus sabaeus

Analyze

Symbol:

BHLHA9

Name:

basic helix-loop-helix family member a9

RGD ID:

18757836

Description:

ENCODES a protein that exhibits protein heterodimerization activity (ortholog); INVOLVED IN developmental process (inferred); ASSOCIATED WITH Bifid Femur with Monodactylous Ectrodactyly (ortholog); chromosome 17p13.3 duplication syndrome (ortholog); Complex Camptosynpolydactyly (ortholog); FOUND IN cytoplasm (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

class A basic helix-loop-helix protein 9

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

ChlSab1.1 - Green Monkey 1.1 Assembly

Position:

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	16	974,176 - 975,818 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	16	974,391 - 975,095 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666059	21,032,819 - 21,034,580 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Bifid Femur with Monodactylous Ectrodactyly (ISO)

chromosome 17p13.3 duplication syndrome (ISO)

Complex Camptosynpolydactyly (ISO)

genetic disease (ISO)

Mesoaxial Synostotic Syndactyly with Phalangeal Reduction (ISO)

Split-Hand/Foot Malformation with Long Bone Deficiency 3 (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

developmental process (IEA)

Cellular Component

cytoplasm (ISO)

Molecular Function

DNA-binding transcription factor activity, RNA polymerase II-specific (IEA)

protein binding (ISO)

protein dimerization activity (IEA)

protein heterodimerization activity (ISO)

RNA polymerase II transcription regulatory region sequence-specific DNA binding (IEA)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

BHLHA9
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	16	974,176 - 975,818 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	16	974,391 - 975,095 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666059	21,032,819 - 21,034,580 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

BHLHA9
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	17	1,270,444 - 1,271,815 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	17	1,270,444 - 1,271,815 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	17	1,173,738 - 1,175,109 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	17	1,120,101 - 1,121,382 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	17	1,187,225 - 1,187,932 (+)	NCBI		Celera
Cytogenetic Map	17	p13.3	NCBI
HuRef	17	1,076,653 - 1,077,340 (+)	NCBI		HuRef
CHM1_1	17	1,182,711 - 1,183,418 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	17	1,161,409 - 1,162,780 (+)	NCBI		T2T-CHM13v2.0

Bhlha9
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	11	76,563,296 - 76,564,502 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	11	76,563,296 - 76,564,502 (+)	Ensembl		GRCm39 Ensembl
GRCm38	11	76,672,470 - 76,673,676 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	11	76,672,470 - 76,673,676 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	11	76,485,972 - 76,487,178 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	11	76,488,665 - 76,489,871 (+)	NCBI		MGSCv36	mm8
Celera	11	84,177,573 - 84,178,779 (+)	NCBI		Celera
Cytogenetic Map	11	B5	NCBI
cM Map	11	45.97	NCBI

Bhlha9
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	62,011,787 - 62,012,908 (+)	NCBI		GRCr8
mRatBN7.2	10	61,513,609 - 61,514,730 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	61,513,609 - 61,514,301 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	10	66,159,278 - 66,160,399 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	65,664,751 - 65,665,872 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	61,134,045 - 61,135,166 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	63,498,267 - 63,500,353 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	63,498,698 - 63,499,390 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	10	63,196,845 - 63,198,872 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	10	67,508,986 - 67,509,678 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	10	67,522,608 - 67,532,269 (-)	NCBI
Celera	10	60,526,218 - 60,528,304 (+)	NCBI		Celera
Cytogenetic Map	10	q24	NCBI

Bhlha9
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955481	2,769,072 - 2,769,833 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955481	2,769,023 - 2,770,269 (+)	NCBI	ChiLan1.0	ChiLan1.0

BHLHA9
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	19	8,836,104 - 8,847,193 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	17	10,810,740 - 10,815,972 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	17	1,254,307 - 1,255,919 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	17	1,153,568 - 1,155,224 (+)	NCBI	panpan1.1	PanPan1.1	panPan2

BHLHA9
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	9	44,584,022 - 44,587,177 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	9	43,736,041 - 43,737,783 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	9	45,402,249 - 45,403,991 (-)	NCBI		ROS_Cfam_1.0
UMICH_Zoey_3.1	9	44,182,136 - 44,183,833 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	9	44,468,264 - 44,470,004 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	9	44,554,846 - 44,556,588 (-)	NCBI		UU_Cfam_GSD_1.0

Bhlha9
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	43,680,082 - 43,681,333 (-)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936538	6,558,044 - 6,559,193 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

BHLHA9
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	12	46,642,545 - 46,643,219 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	12	46,641,389 - 46,643,923 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	12	48,731,906 - 48,735,408 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

Bhlha9
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624786	3,054,115 - 3,055,692 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	endocrine system	hemolymphoid system	nervous system
High
Medium
Low		10
Below cutoff	1	7	14

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_008009765	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JACDXN010000027	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSCSAT00000019204 ⟹ ENSCSAP00000018624

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1 Ensembl	16	974,391 - 975,095 (+)	Ensembl

RefSeq Acc Id:

XM_008009765 ⟹ XP_008007956

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	16	974,176 - 975,818 (+)	NCBI
Vero_WHO_p1.0	NW_023666059	21,032,819 - 21,034,580 (-)	NCBI

Sequence:

show sequence

GAGGCCGGTAATAATGCAGGAGGAGGGAGATGGATGGATGGGAGGGCGGGGCGCCGCGTGGTGC
CATAAAGCCCAGCTGGAGGGGGCCTGTCTCGGGAGTGTCCAGCCCCAGGAGCCGGGGACCTTCC
GCGTAGCGAGCCGGGGCCGGGGCAGGGGGCAGACGGCAGAGGGCAGAGGGCCGGGACTGGGGCA
GAGGGTGAGGGCCCGGGAAGGCCATGCTGCGGGGCGTGCCAGGACTAGGCCTCAGGGCGCGGAA
GGGGGCCGAAGGCTCTGCGGAGGACTTGGGGGGCCCCTGCCCCGAGCCCGGGGGTGATTTGGGG
GTGCTGGGGGCGAACGGCGCTTCCCCTGGCCAGGGCGAGGCAGAAGAGCCGGCTGGGAGGAGGC
GCGCGCGGCCGGTGCGGTCCAAGGCGCGGCGCATGGCGGCCAACGTGCGGGAGCGCAAGCGCAT
CCTGGACTACAATGAGGCCTTCAACGCGCTGCGCCGGGCGCTGCGGCACGACCTGGGCGGCAAG
AGGCTCTCCAAGATCGCCACGCTGCGCAGAGCCATCCACCGCATCGCCGCGCTCTCCCTGGTCC
TGCGCGCCAGCCCCGCGCCCCGCGAGCCCTGCGGACACCTGGAGTGCCACGGCCCAGCTGCGCG
CGGGGACACCGGAGACACAGGCGCCAGCCTCCGGACGCCTGCAGGGCCCAGCCTCGCACGCCCA
GACGCCGCCCACCCCTCGGTGCCGTCTGCGCCCCGCTGTGCCTCGTGCCCCCCGCACGCGCCCC
CGGGACGGCCCAGCGCGGTGGCCGAGGGGCCGGGCCTAGCCCAGGCCTCCTGGGGAAGCTGGCG
CCGCTGTCCGGGGCCTTCCTCTGCCGGGCCGCCTCCCTGGCCGCGGGGCTACCTGCGAGCCGCT
CCCAGGATGGGCCACCCGCGCTCCTGACCAGCCTCGAGGCACCAGCGGGGCTGGAGGGAGGCCG
TGCTGGCAGCTGGACGACAAAAGCCGGGACTGCAAAGGCGTCCTGGACAAGAGCAGAACTGGAC
GGGCTGAGACCTGGCCTGAAAGAGACGCGGCCTCCCTAGAGACAAGGAGCTCTGGGGCCTGAGG
CTGCCCCCCACATCCCAGCCTGGGCCAGAGAGAAGGAGCTCCAGGCCCTGGGGCTGCGCCCCCT
CCATCCCAACCTGGGGAGGAAGTTCCCAGAAAGGCTCAGGATCCTGAGCTCATCTTGGACTCGA
ACTCGTCTTGGAGCCACCTTCGCACCCCTGCGCCTCCGAGCCCTGTGTGCTCTCGCTGCTTTTA
GGAGAGTGAGGGCTTTGGGGCAGCAGGTGTGGGAGCGTGGGAATGCGGGTGGGGCCTGCTGTGG
TCTCGTGGGCACATGAGTGCGGAGTCCCCTTCCCCTGCCTGCGCTGCTGCCCAAGCCTGATCCG
GGAGAGGCAGCAGCAGCAGCCAAATAAAAAGGAAAAACTCATTTCTGTCCGATACCACGACTCC
AGTGGGCCCAGTGGCCCAGGGTGGCAGGAACGCCTGAGGGCCCGGGGCTCGCCTTGGAACGCTG
GGCGGGGTCTAAGGCCCACAGGTCAGCACCTGGGGGAACTCGTTCATAGCAAGACCCCAGGTGT
GGCTGAGCACTGTGGGGGCCCAAGGGTAGGAAAAAGACATCCA

hide sequence

Protein Sequences


Protein RefSeqs	XP_008007956	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCSAP00000018624
	ENSCSAP00000018624.1

RefSeq Acc Id:	XP_008007956 ⟸ XM_008009765
- UniProtKB:	A0A0D9SCN5 (UniProtKB/TrEMBL)

RefSeq Acc Id:

ENSCSAP00000018624 ⟸ ENSCSAT00000019204

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCSAG00000019114	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCSAT00000019204.1	UniProtKB/TrEMBL
Gene3D-CATH	4.10.280.10	UniProtKB/TrEMBL
InterPro	bHLH_dom	UniProtKB/TrEMBL
	HLH_DNA-bd_sf	UniProtKB/TrEMBL
KEGG Report	csab:103242096	UniProtKB/TrEMBL
NCBI Gene	BHLHA9	ENTREZGENE
PANTHER	BASIC HELIX-LOOP-HELIX TRANSCRIPTION FACTOR, TWIST	UniProtKB/TrEMBL
	CLASS A BASIC HELIX-LOOP-HELIX PROTEIN 9	UniProtKB/TrEMBL
Pfam	HLH	UniProtKB/TrEMBL
PROSITE	BHLH	UniProtKB/TrEMBL
SMART	HLH	UniProtKB/TrEMBL
Superfamily-SCOP	SSF47459	UniProtKB/TrEMBL
UniProt	A0A0D9SCN5	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar

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