TMEM33 (transmembrane protein 33) - Rat Genome Database

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Gene: TMEM33 (transmembrane protein 33) Chlorocebus sabaeus
Analyze
Symbol: TMEM33
Name: transmembrane protein 33
RGD ID: 18748219
Description: INVOLVED IN positive regulation of IRE1-mediated unfolded protein response (ortholog); positive regulation of PERK-mediated unfolded protein response (ortholog); regulation of endoplasmic reticulum tubular network organization (ortholog); ASSOCIATED WITH genetic disease (ortholog); FOUND IN endoplasmic reticulum membrane (ortholog); melanosome (ortholog); nuclear envelope (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1278,402,481 - 8,423,306 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl278,404,044 - 8,423,314 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604754,712,138 - 54,733,780 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
TMEM33
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1278,402,481 - 8,423,306 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl278,404,044 - 8,423,314 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604754,712,138 - 54,733,780 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
TMEM33
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38441,935,137 - 41,960,803 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl441,935,129 - 41,960,803 (+)EnsemblGRCh38hg38GRCh38
GRCh37441,937,446 - 41,962,820 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36441,631,926 - 41,652,580 (+)NCBINCBI36Build 36hg18NCBI36
Build 34441,778,096 - 41,798,751NCBI
Celera442,381,148 - 42,406,836 (+)NCBICelera
Cytogenetic Map4p13NCBI
HuRef441,259,038 - 41,284,726 (+)NCBIHuRef
CHM1_1441,937,631 - 41,963,316 (+)NCBICHM1_1
T2T-CHM13v2.0441,908,187 - 41,934,614 (+)NCBIT2T-CHM13v2.0
Tmem33
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39567,417,908 - 67,448,804 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl567,417,908 - 67,448,804 (+)EnsemblGRCm39 Ensembl
GRCm38567,260,565 - 67,291,461 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl567,260,565 - 67,291,461 (+)EnsemblGRCm38mm10GRCm38
MGSCv37567,651,891 - 67,682,700 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36567,539,787 - 67,570,596 (+)NCBIMGSCv36mm8
Celera564,569,775 - 64,594,015 (+)NCBICelera
Cytogenetic Map5C3.1NCBI
cM Map536.0NCBI
Tmem33
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81441,242,358 - 41,264,586 (-)NCBIGRCr8
mRatBN7.21440,888,485 - 40,910,715 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1440,885,712 - 40,910,715 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1441,234,616 - 41,256,847 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01442,534,696 - 42,556,927 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01441,015,491 - 41,037,722 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01442,537,352 - 42,559,580 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1442,535,701 - 42,560,174 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01442,333,379 - 42,355,562 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41443,495,963 - 43,516,901 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11443,498,867 - 43,519,292 (-)NCBI
Celera1440,042,568 - 40,064,657 (-)NCBICelera
Cytogenetic Map14p11NCBI
Tmem33
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554435,747,699 - 5,773,773 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554435,747,681 - 5,773,759 (-)NCBIChiLan1.0ChiLan1.0
TMEM33
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2342,120,006 - 42,145,850 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1442,313,370 - 42,348,116 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0436,260,669 - 36,281,546 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1442,108,335 - 42,133,910 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl442,108,335 - 42,127,575 (+)Ensemblpanpan1.1panPan2
TMEM33
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11339,013,799 - 39,039,059 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1339,013,855 - 39,052,547 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1338,989,700 - 39,027,859 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01339,504,153 - 39,542,337 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1339,504,178 - 39,542,911 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11339,194,205 - 39,232,343 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01339,305,198 - 39,343,358 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01339,770,675 - 39,808,630 (+)NCBIUU_Cfam_GSD_1.0
Tmem33
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440528537,131,680 - 37,159,499 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364829,137,920 - 9,166,860 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364829,138,752 - 9,166,555 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TMEM33
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl833,012,390 - 33,036,993 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1833,012,540 - 33,036,448 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2834,667,109 - 34,688,275 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Tmem33
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476124,987,555 - 25,014,993 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476124,983,553 - 25,014,582 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium 36 18 60
Low 2
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSCSAT00000015191   ⟹   ENSCSAP00000013138
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl278,404,044 - 8,423,314 (-)Ensembl
RefSeq Acc Id: XM_008017526   ⟹   XP_008015717
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1278,402,481 - 8,423,305 (-)NCBI
Vero_WHO_p1.0NW_02366604754,713,925 - 54,733,780 (-)NCBI
Sequence:
RefSeq Acc Id: XM_038008589   ⟹   XP_037864517
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366604754,712,138 - 54,733,215 (-)NCBI
Protein Sequences
Protein RefSeqs XP_008015717 (Get FASTA)   NCBI Sequence Viewer  
  XP_037864517 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000013138
  ENSCSAP00000013138.1
Reference Protein Sequences
RefSeq Acc Id: XP_008015717   ⟸   XM_008017526
- Peptide Label: isoform X2
- UniProtKB: A0A0D9RWZ9 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCSAP00000013138   ⟸   ENSCSAT00000015191
RefSeq Acc Id: XP_037864517   ⟸   XM_038008589
- Peptide Label: isoform X1


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000017098 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000015191.1 UniProtKB/TrEMBL
InterPro TMEM33/Pom33 UniProtKB/TrEMBL
NCBI Gene TMEM33 ENTREZGENE
PANTHER TRANSMEMBRANE PROTEIN 33 UniProtKB/TrEMBL
  TRANSMEMBRANE PROTEIN 33 UniProtKB/TrEMBL
Pfam UPF0121 UniProtKB/TrEMBL
UniProt A0A0D9RWZ9 ENTREZGENE, UniProtKB/TrEMBL