JADE1 (jade family PHD finger 1) - Rat Genome Database

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Gene: JADE1 (jade family PHD finger 1) Chlorocebus sabaeus
Analyze
Symbol: JADE1
Name: jade family PHD finger 1
RGD ID: 18745907
Description: ENCODES a protein that exhibits histone H3K14 acetyltransferase activity (ortholog); histone H4K12 acetyltransferase activity (ortholog); histone H4K16 acetyltransferase activity (ortholog); INVOLVED IN negative regulation of canonical Wnt signaling pathway (ortholog); negative regulation of G1/S transition of mitotic cell cycle (ortholog); regulation of cell cycle (ortholog); ASSOCIATED WITH genetic disease (ortholog); FOUND IN centrosome (ortholog); ciliary basal body (ortholog); cytoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: protein Jade-1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1775,926,199 - 75,993,381 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl775,926,616 - 75,995,327 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603755,088,979 - 55,156,044 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
JADE1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1775,926,199 - 75,993,381 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl775,926,616 - 75,995,327 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603755,088,979 - 55,156,044 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JADE1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh384128,809,700 - 128,875,224 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl4128,809,700 - 128,875,224 (+)EnsemblGRCh38hg38GRCh38
GRCh374129,730,855 - 129,796,379 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 364129,950,229 - 130,015,829 (+)NCBINCBI36Build 36hg18NCBI36
Celera4127,112,780 - 127,178,419 (+)NCBICelera
Cytogenetic Map4q28.2NCBI
HuRef4125,461,152 - 125,526,511 (+)NCBIHuRef
CHM1_14129,707,281 - 129,772,873 (+)NCBICHM1_1
T2T-CHM13v2.04132,113,886 - 132,179,423 (+)NCBIT2T-CHM13v2.0
Jade1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39341,510,169 - 41,571,299 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl341,510,166 - 41,571,299 (+)EnsemblGRCm39 Ensembl
GRCm38341,555,734 - 41,616,864 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl341,555,731 - 41,616,864 (+)EnsemblGRCm38mm10GRCm38
MGSCv37341,359,656 - 41,420,786 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36341,677,744 - 41,713,406 (+)NCBIMGSCv36mm8
Celera341,278,427 - 41,339,323 (+)NCBICelera
Cytogenetic Map3BNCBI
cM Map319.88NCBI
Jade1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82126,471,124 - 126,524,252 (+)NCBIGRCr8
mRatBN7.22124,543,233 - 124,596,361 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2124,543,286 - 124,596,354 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2131,113,743 - 131,166,808 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02129,226,166 - 129,279,231 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02123,855,336 - 123,908,403 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02128,461,147 - 128,514,298 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2128,461,224 - 128,514,291 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02148,061,324 - 148,114,469 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42128,499,983 - 128,553,050 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12128,444,210 - 128,502,196 (+)NCBI
Celera2119,445,989 - 119,498,978 (+)NCBICelera
Cytogenetic Map2q26NCBI
Jade1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542812,765,550 - 12,835,507 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542812,762,629 - 12,835,310 (-)NCBIChiLan1.0ChiLan1.0
JADE1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v23126,569,673 - 126,635,286 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan14126,836,180 - 126,901,814 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v04120,969,668 - 121,035,282 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.14132,271,559 - 132,336,620 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl4132,272,642 - 132,336,620 (+)Ensemblpanpan1.1panPan2
JADE1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11912,187,345 - 12,250,343 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1912,189,281 - 12,250,349 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1912,375,413 - 12,438,357 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01912,274,017 - 12,337,297 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1912,275,915 - 12,337,306 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11912,246,286 - 12,309,249 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01912,535,170 - 12,598,287 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01912,995,766 - 13,058,843 (-)NCBIUU_Cfam_GSD_1.0
Jade1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530160,861,830 - 60,914,355 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366422,157,543 - 2,207,146 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366422,154,662 - 2,207,186 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JADE1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl896,209,079 - 96,270,889 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1896,208,217 - 96,564,132 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.28102,990,692 - 103,053,784 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Jade1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247779,666,762 - 9,723,381 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247779,664,111 - 9,726,266 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium 18 30
Low 18 20 30
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSCSAT00000001590   ⟹   ENSCSAP00000014486
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl775,926,616 - 75,995,327 (+)Ensembl
RefSeq Acc Id: XM_007999790   ⟹   XP_007997981
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1775,927,371 - 75,991,806 (+)NCBI
Vero_WHO_p1.0NW_02366603755,090,324 - 55,156,044 (+)NCBI
Sequence:
RefSeq Acc Id: XM_007999792   ⟹   XP_007997983
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1775,928,308 - 75,991,431 (+)NCBI
Vero_WHO_p1.0NW_02366603755,090,721 - 55,156,044 (+)NCBI
Sequence:
RefSeq Acc Id: XM_007999793   ⟹   XP_007997984
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1775,926,199 - 75,993,381 (+)NCBI
Vero_WHO_p1.0NW_02366603755,088,979 - 55,156,044 (+)NCBI
Sequence:
RefSeq Acc Id: XM_007999794   ⟹   XP_007997985
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1775,926,505 - 75,993,381 (+)NCBI
Vero_WHO_p1.0NW_02366603755,089,260 - 55,156,044 (+)NCBI
Sequence:
RefSeq Acc Id: XM_007999796   ⟹   XP_007997987
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1775,927,851 - 75,993,381 (+)NCBI
Vero_WHO_p1.0NW_02366603755,090,550 - 55,156,044 (+)NCBI
Sequence:
RefSeq Acc Id: XM_007999797   ⟹   XP_007997988
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1775,926,549 - 75,991,431 (+)NCBI
Vero_WHO_p1.0NW_02366603755,089,292 - 55,156,044 (+)NCBI
Sequence:
RefSeq Acc Id: XM_007999798   ⟹   XP_007997989
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1775,928,431 - 75,993,381 (+)NCBI
Vero_WHO_p1.0NW_02366603755,091,129 - 55,156,044 (+)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_007997984   ⟸   XM_007999793
- Peptide Label: isoform X3
- UniProtKB: A0A0D9S0U7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_007997985   ⟸   XM_007999794
- Peptide Label: isoform X3
- UniProtKB: A0A0D9S0U7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_007997988   ⟸   XM_007999797
- Peptide Label: isoform X3
- UniProtKB: A0A0D9S0U7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_007997981   ⟸   XM_007999790
- Peptide Label: isoform X1
RefSeq Acc Id: XP_007997987   ⟸   XM_007999796
- Peptide Label: isoform X3
- UniProtKB: A0A0D9S0U7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_007997983   ⟸   XM_007999792
- Peptide Label: isoform X2
RefSeq Acc Id: XP_007997989   ⟸   XM_007999798
- Peptide Label: isoform X3
- UniProtKB: A0A0D9S0U7 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCSAP00000014486   ⟸   ENSCSAT00000001590


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000003562 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000001590.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.40.10 UniProtKB/TrEMBL
InterPro Enhancer_polycomb-like_N UniProtKB/TrEMBL
  EPHD UniProtKB/TrEMBL
  Jade-1_PHD UniProtKB/TrEMBL
  Zinc_finger_PHD-type_CS UniProtKB/TrEMBL
  Znf_FYVE_PHD UniProtKB/TrEMBL
  Znf_PHD UniProtKB/TrEMBL
  Znf_PHD-finger UniProtKB/TrEMBL
  Znf_RING/FYVE/PHD UniProtKB/TrEMBL
NCBI Gene JADE1 ENTREZGENE
PANTHER PHD FINGER PROTEINS UniProtKB/TrEMBL
  PROTEIN JADE-1 UniProtKB/TrEMBL
Pfam EPL1 UniProtKB/TrEMBL
  PHD_2 UniProtKB/TrEMBL
  zf-HC5HC2H_2 UniProtKB/TrEMBL
PROSITE EPHD UniProtKB/TrEMBL
  ZF_PHD_1 UniProtKB/TrEMBL
  ZF_PHD_2 UniProtKB/TrEMBL
SMART PHD UniProtKB/TrEMBL
Superfamily-SCOP SSF57903 UniProtKB/TrEMBL
UniProt A0A0D9S0U7 ENTREZGENE, UniProtKB/TrEMBL