RBP5 (retinol binding protein 5) - Rat Genome Database

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Gene: RBP5 (retinol binding protein 5) Chlorocebus sabaeus
Analyze
Symbol: RBP5
Name: retinol binding protein 5
RGD ID: 18745446
Description: ENCODES a protein that exhibits fatty acid binding (inferred); lipid binding (inferred); INVOLVED IN fatty acid transport (inferred); ASSOCIATED WITH developmental and epileptic encephalopathy 21 (ortholog); genetic disease (ortholog); Hyperphosphatemic Familial Tumoral Calcinosis 1 (ortholog); FOUND IN cytosol (inferred); nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: retinol-binding protein 5
RGD Orthologs
Human
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1117,191,199 - 7,196,519 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl117,191,636 - 7,196,365 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660631,013,108 - 1,019,522 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytosol  (IEA)
nucleus  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
RBP5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1117,191,199 - 7,196,519 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl117,191,636 - 7,196,365 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660631,013,108 - 1,019,522 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
RBP5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38127,115,736 - 7,130,005 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl127,115,736 - 7,128,889 (-)EnsemblGRCh38hg38GRCh38
GRCh37127,276,282 - 7,282,601 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36127,167,554 - 7,172,733 (-)NCBINCBI36Build 36hg18NCBI36
Build 34127,167,554 - 7,172,733NCBI
Celera128,852,489 - 8,857,661 (-)NCBICelera
Cytogenetic Map12p13.31NCBI
HuRef127,089,063 - 7,094,241 (-)NCBIHuRef
CHM1_1127,275,302 - 7,280,474 (-)NCBICHM1_1
T2T-CHM13v2.0127,130,477 - 7,143,159 (-)NCBIT2T-CHM13v2.0
Rbp5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554134,682,477 - 4,689,949 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554134,682,477 - 4,689,949 (-)NCBIChiLan1.0ChiLan1.0
RBP5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21012,687,535 - 12,694,552 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11212,684,540 - 12,692,761 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0127,253,922 - 7,261,145 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1127,169,592 - 7,175,435 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl127,169,592 - 7,175,800 (-)Ensemblpanpan1.1panPan2
RBP5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12737,908,056 - 37,911,805 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2737,908,067 - 37,911,516 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha278,704,984 - 8,708,787 (-)NCBIDog10K_Boxer_Tasha
Rbp5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945102,005,818 - 102,011,624 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936709674,819 - 679,503 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936709673,383 - 679,173 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RBP5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl563,601,134 - 63,612,191 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1563,601,101 - 63,605,301 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Rbp5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248603,705,210 - 3,709,055 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248603,705,210 - 3,709,179 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium 20 4
Low 16 15 46
Below cutoff 4 9

Sequence


Reference Sequences
RefSeq Acc Id: ENSCSAT00000008013   ⟹   ENSCSAP00000006170
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl117,191,636 - 7,196,365 (-)Ensembl
RefSeq Acc Id: XM_007967455   ⟹   XP_007965646
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1117,191,199 - 7,196,519 (-)NCBI
Vero_WHO_p1.0NW_0236660631,014,048 - 1,019,522 (+)NCBI
Sequence:
RefSeq Acc Id: XM_037988337   ⟹   XP_037844265
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_0236660631,013,108 - 1,019,264 (+)NCBI
Protein Sequences
Protein RefSeqs XP_007965646 (Get FASTA)   NCBI Sequence Viewer  
  XP_037844265 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000006170
  ENSCSAP00000006170.1
Reference Protein Sequences
RefSeq Acc Id: XP_007965646   ⟸   XM_007967455
- Peptide Label: isoform X1
- UniProtKB: A0A0D9RC31 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCSAP00000006170   ⟸   ENSCSAT00000008013
RefSeq Acc Id: XP_037844265   ⟸   XM_037988337
- Peptide Label: isoform X2


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000009936 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000008013.1 UniProtKB/TrEMBL
Gene3D-CATH 2.40.128.20 UniProtKB/TrEMBL
InterPro Calycin UniProtKB/TrEMBL
  Fatty_acid-bd UniProtKB/TrEMBL
  ILBP UniProtKB/TrEMBL
  Lipocln_cytosolic_FA-bd_dom UniProtKB/TrEMBL
KEGG Report csab:103218502 UniProtKB/TrEMBL
NCBI Gene RBP5 ENTREZGENE
PANTHER PTHR11955 UniProtKB/TrEMBL
  PTHR11955:SF74 UniProtKB/TrEMBL
Pfam Lipocalin UniProtKB/TrEMBL
PRINTS FATTYACIDBP UniProtKB/TrEMBL
Superfamily-SCOP SSF50814 UniProtKB/TrEMBL
UniProt A0A0D9RC31 ENTREZGENE, UniProtKB/TrEMBL