B3GALNT1 (beta-1,3-N-acetylgalactosaminyltransferase 1 (globoside blood group)) - Rat Genome Database

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Gene: B3GALNT1 (beta-1,3-N-acetylgalactosaminyltransferase 1 (globoside blood group)) Chlorocebus sabaeus
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Symbol: B3GALNT1
Name: beta-1,3-N-acetylgalactosaminyltransferase 1 (globoside blood group)
RGD ID: 18744527
Description: ENCODES a protein that exhibits galactosylgalactosylglucosylceramide beta-D-acetylgalactosaminyltransferase activity (inferred); glycosyltransferase activity (inferred); hexosyltransferase activity (inferred); INVOLVED IN oligosaccharide biosynthetic process (ortholog); ASSOCIATED WITH genetic disease (ortholog); polyagglutination (ortholog); FOUND IN endomembrane system (inferred); Golgi apparatus (inferred); Golgi membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: UDP-GalNAc:beta-1,3-N-acetylgalactosaminyltransferase 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11529,766,482 - 29,786,604 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1529,784,685 - 29,785,680 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660412,277,873 - 2,300,050 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
B3GALNT1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11529,766,482 - 29,786,604 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1529,784,685 - 29,785,680 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660412,277,873 - 2,300,050 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
B3GALNT1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383161,083,883 - 161,105,349 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3161,083,883 - 161,105,411 (-)EnsemblGRCh38hg38GRCh38
GRCh373160,801,671 - 160,823,137 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 363162,284,365 - 162,305,854 (-)NCBINCBI36Build 36hg18NCBI36
Celera3159,223,899 - 159,245,387 (-)NCBICelera
Cytogenetic Map3q26.1NCBI
HuRef3158,200,115 - 158,221,604 (-)NCBIHuRef
CHM1_13160,764,694 - 160,786,182 (-)NCBICHM1_1
T2T-CHM13v2.03163,858,620 - 163,880,089 (-)NCBIT2T-CHM13v2.0
B3galnt1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39369,481,252 - 69,506,305 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl369,481,491 - 69,506,293 (-)EnsemblGRCm39 Ensembl
GRCm38369,573,919 - 69,598,960 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl369,574,158 - 69,598,960 (-)EnsemblGRCm38mm10GRCm38
MGSCv37369,378,108 - 69,402,783 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36369,662,115 - 69,686,790 (-)NCBIMGSCv36mm8
Celera369,680,953 - 69,707,421 (-)NCBICelera
Cytogenetic Map3E1NCBI
cM Map332.24NCBI
B3galnt1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82156,157,234 - 156,187,037 (-)NCBIGRCr8
mRatBN7.22153,847,297 - 153,877,371 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2153,846,474 - 153,877,332 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2160,991,067 - 161,020,551 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02159,041,578 - 159,071,064 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02153,674,380 - 153,703,862 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02166,226,736 - 166,255,978 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2166,226,754 - 166,255,302 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02185,583,745 - 185,613,045 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42159,670,705 - 159,701,464 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12159,620,674 - 159,651,427 (-)NCBI
Celera2148,195,488 - 148,224,116 (-)NCBICelera
Cytogenetic Map2q32NCBI
B3galnt1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544811,556,179 - 11,583,556 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495544811,556,179 - 11,583,556 (-)NCBIChiLan1.0ChiLan1.0
B3GALNT1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22159,013,443 - 159,035,299 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13159,018,175 - 159,040,088 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03158,098,264 - 158,120,080 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13166,144,699 - 166,166,378 (-)NCBIpanpan1.1PanPan1.1panPan2
B3GALNT1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13427,081,678 - 27,106,863 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3431,124,309 - 31,149,892 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03427,140,085 - 27,165,781 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3427,140,084 - 27,165,722 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13427,068,967 - 27,094,700 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03427,028,702 - 27,054,203 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03427,302,320 - 27,327,883 (-)NCBIUU_Cfam_GSD_1.0
B3galnt1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560292,999,786 - 93,029,618 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367081,037,439 - 1,042,348 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367081,036,710 - 1,067,203 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
B3GALNT1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13100,772,532 - 100,807,993 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.113100,772,892 - 100,811,349 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213109,170,254 - 109,178,788 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Pig Cytomap13q23-q41NCBI
B3galnt1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473038,996,928 - 39,020,567 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473038,996,922 - 39,021,170 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium 36 60
Low 18
Below cutoff 2

Sequence


Reference Sequences
RefSeq Acc Id: ENSCSAT00000018980   ⟹   ENSCSAP00000018409
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl1529,784,685 - 29,785,680 (+)Ensembl
RefSeq Acc Id: XM_008008521   ⟹   XP_008006712
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11529,769,015 - 29,786,604 (+)NCBI
Vero_WHO_p1.0NW_0236660412,278,377 - 2,300,045 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008008522   ⟹   XP_008006713
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11529,766,482 - 29,786,604 (+)NCBI
Vero_WHO_p1.0NW_0236660412,278,383 - 2,300,045 (+)NCBI
Sequence:
RefSeq Acc Id: XM_038002647   ⟹   XP_037858575
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_0236660412,277,873 - 2,300,050 (+)NCBI
RefSeq Acc Id: XM_038002648   ⟹   XP_037858576
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_0236660412,278,231 - 2,300,045 (+)NCBI
RefSeq Acc Id: XM_038002649   ⟹   XP_037858577
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_0236660412,278,129 - 2,300,050 (+)NCBI
RefSeq Acc Id: XM_038002650   ⟹   XP_037858578
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_0236660412,278,237 - 2,300,045 (+)NCBI
RefSeq Acc Id: XM_038002651   ⟹   XP_037858579
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_0236660412,278,127 - 2,300,050 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_008006713   ⟸   XM_008008522
- UniProtKB: A0A0D9SC20 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_008006712   ⟸   XM_008008521
- UniProtKB: A0A0D9SC20 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCSAP00000018409   ⟸   ENSCSAT00000018980
RefSeq Acc Id: XP_037858575   ⟸   XM_038002647
- UniProtKB: A0A0D9SC20 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_037858579   ⟸   XM_038002651
- UniProtKB: A0A0D9SC20 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_037858577   ⟸   XM_038002649
- UniProtKB: A0A0D9SC20 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_037858576   ⟸   XM_038002648
- UniProtKB: A0A0D9SC20 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_037858578   ⟸   XM_038002650
- UniProtKB: A0A0D9SC20 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000018890 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000018980.1 UniProtKB/TrEMBL
Gene3D-CATH 3.90.550.50 UniProtKB/TrEMBL
InterPro Glyco_trans_31 UniProtKB/TrEMBL
KEGG Report csab:103241387 UniProtKB/TrEMBL
NCBI Gene B3GALNT1 ENTREZGENE
PANTHER PTHR11214 UniProtKB/TrEMBL
  UDP-GALNAC:BETA-1,3-N-ACETYLGALACTOSAMINYLTRANSFERASE 1 UniProtKB/TrEMBL
Pfam Galactosyl_T UniProtKB/TrEMBL
UniProt A0A0D9SC20 ENTREZGENE, UniProtKB/TrEMBL