BRD4 (bromodomain containing 4) - Rat Genome Database

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Gene: BRD4 (bromodomain containing 4) Chlorocebus sabaeus
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Symbol: BRD4
Name: bromodomain containing 4
RGD ID: 18741037
Description: ENCODES a protein that exhibits chromatin binding (ortholog); DNA binding (ortholog); enzyme binding (ortholog); INVOLVED IN chromosome segregation (ortholog); DNA damage response (ortholog); inner cell mass cell proliferation (ortholog); PARTICIPATES IN histone modification pathway; ASSOCIATED WITH acute myeloid leukemia (ortholog); alopecia (ortholog); autosomal dominant polycystic kidney disease (ortholog); FOUND IN condensed nuclear chromosome (ortholog); cyclin/CDK positive transcription elongation factor complex (ortholog); nucleolus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: bromodomain-containing protein 4
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1613,836,332 - 13,883,459 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl613,836,324 - 13,873,877 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660745,569,352 - 5,667,598 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
BRD4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1613,836,332 - 13,883,459 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl613,836,324 - 13,873,877 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660745,569,352 - 5,667,598 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
BRD4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381915,235,519 - 15,332,539 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1915,235,519 - 15,332,545 (-)EnsemblGRCh38hg38GRCh38
GRCh371915,346,330 - 15,443,350 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361915,209,301 - 15,252,262 (-)NCBINCBI36Build 36hg18NCBI36
Build 341915,209,300 - 15,252,262NCBI
Celera1915,243,961 - 15,286,908 (-)NCBICelera
Cytogenetic Map19p13.12NCBI
HuRef1914,916,406 - 14,959,159 (-)NCBIHuRef
CHM1_11915,347,786 - 15,390,760 (-)NCBICHM1_1
T2T-CHM13v2.01915,360,431 - 15,457,479 (-)NCBIT2T-CHM13v2.0
Brd4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391732,415,246 - 32,503,717 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1732,415,248 - 32,503,696 (-)EnsemblGRCm39 Ensembl
GRCm381732,196,272 - 32,284,743 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1732,196,274 - 32,284,722 (-)EnsemblGRCm38mm10GRCm38
MGSCv371732,333,219 - 32,421,068 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361731,924,979 - 32,013,849 (-)NCBIMGSCv36mm8
Celera1733,114,772 - 33,202,572 (-)NCBICelera
Cytogenetic Map17B1NCBI
cM Map1717.39NCBI
Brd4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8711,866,997 - 11,946,575 (-)NCBIGRCr8
mRatBN7.2711,216,446 - 11,296,029 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl711,216,446 - 11,295,539 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx714,035,041 - 14,114,618 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0715,912,454 - 15,992,035 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0713,783,992 - 13,863,501 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0714,222,101 - 14,303,055 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl714,222,101 - 14,303,055 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0714,378,187 - 14,457,537 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4712,772,428 - 12,853,406 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1712,774,215 - 12,853,571 (-)NCBI
Celera79,328,703 - 9,362,558 (-)NCBICelera
Cytogenetic Map7q11NCBI
Brd4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554957,957,510 - 7,988,498 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554957,959,033 - 7,989,216 (+)NCBIChiLan1.0ChiLan1.0
BRD4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22020,150,386 - 20,248,121 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11919,151,881 - 19,250,932 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01914,768,239 - 14,805,770 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11915,752,096 - 15,789,630 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1915,754,930 - 15,789,600 (-)Ensemblpanpan1.1panPan2
BRD4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12046,844,795 - 46,927,620 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2046,891,514 - 46,927,608 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2046,692,316 - 46,776,626 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02047,331,511 - 47,415,598 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2047,321,212 - 47,415,118 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12046,566,265 - 46,650,355 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02046,982,908 - 47,066,974 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02047,256,472 - 47,340,611 (+)NCBIUU_Cfam_GSD_1.0
Brd4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118205,610,207 - 205,695,648 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365965,177,147 - 5,246,518 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365965,176,682 - 5,246,102 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
BRD4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl262,250,989 - 62,345,362 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1262,250,958 - 62,345,851 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2261,827,913 - 61,923,457 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Brd4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046249012,346,734 - 2,380,852 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046249012,348,218 - 2,434,429 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium 36 37
Low 20 23
Below cutoff

Sequence


RefSeq Acc Id: ENSCSAT00000004157   ⟹   ENSCSAP00000002413
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl613,836,324 - 13,873,877 (-)Ensembl
RefSeq Acc Id: XM_007995579   ⟹   XP_007993770
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1613,836,332 - 13,883,459 (-)NCBI
Vero_WHO_p1.0NW_0236660745,631,053 - 5,667,598 (+)NCBI
Sequence:
RefSeq Acc Id: XM_007995580   ⟹   XP_007993771
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1613,847,794 - 13,883,456 (-)NCBI
Vero_WHO_p1.0NW_0236660745,631,054 - 5,657,434 (+)NCBI
Sequence:
RefSeq Acc Id: XM_037992165   ⟹   XP_037848093
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_0236660745,569,352 - 5,667,598 (+)NCBI
RefSeq Acc Id: XM_037992166   ⟹   XP_037848094
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_0236660745,569,354 - 5,657,434 (+)NCBI
Protein Sequences
Protein RefSeqs XP_007993770 (Get FASTA)   NCBI Sequence Viewer  
  XP_007993771 (Get FASTA)   NCBI Sequence Viewer  
  XP_037848093 (Get FASTA)   NCBI Sequence Viewer  
  XP_037848094 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000002413.1
RefSeq Acc Id: XP_007993770   ⟸   XM_007995579
- Peptide Label: isoform X1
- UniProtKB: A0A0D9R1C4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_007993771   ⟸   XM_007995580
- Peptide Label: isoform X3
RefSeq Acc Id: ENSCSAP00000002413   ⟸   ENSCSAT00000004157
RefSeq Acc Id: XP_037848093   ⟸   XM_037992165
- Peptide Label: isoform X2
- UniProtKB: A0A0D9R1C4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_037848094   ⟸   XM_037992166
- Peptide Label: isoform X4


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000006129 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000004157.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.1270.220 UniProtKB/TrEMBL
  1.20.920.10 UniProtKB/TrEMBL
InterPro BRD4_CDT UniProtKB/TrEMBL
  Bromo_Brdt_I UniProtKB/TrEMBL
  Bromo_Brdt_II UniProtKB/TrEMBL
  Bromodomain UniProtKB/TrEMBL
  Bromodomain-like_sf UniProtKB/TrEMBL
  Bromodomain_CS UniProtKB/TrEMBL
  NET_dom UniProtKB/TrEMBL
  NET_sf UniProtKB/TrEMBL
NCBI Gene BRD4 ENTREZGENE
PANTHER BROMODOMAIN-CONTAINING PROTEIN 4 UniProtKB/TrEMBL
  FALZ-RELATED BROMODOMAIN-CONTAINING PROTEINS UniProtKB/TrEMBL
Pfam BET UniProtKB/TrEMBL
  BRD4_CDT UniProtKB/TrEMBL
  Bromodomain UniProtKB/TrEMBL
PRINTS BROMODOMAIN UniProtKB/TrEMBL
  PRICHEXTENSN UniProtKB/TrEMBL
PROSITE BROMODOMAIN_1 UniProtKB/TrEMBL
  BROMODOMAIN_2 UniProtKB/TrEMBL
  NET UniProtKB/TrEMBL
SMART BROMO UniProtKB/TrEMBL
Superfamily-SCOP SSF47370 UniProtKB/TrEMBL
UniProt A0A0D9R1C4 ENTREZGENE, UniProtKB/TrEMBL