GLB1 (galactosidase beta 1) - Rat Genome Database

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Gene: GLB1 (galactosidase beta 1) Chlorocebus sabaeus
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Symbol: GLB1
Name: galactosidase beta 1
RGD ID: 18738031
Description: ENCODES a protein that exhibits beta-galactosidase activity (ortholog); galactoside binding (ortholog); INVOLVED IN galactose catabolic process (ortholog); response to cortisone (ortholog); response to Thyroglobulin triiodothyronine (ortholog); PARTICIPATES IN Fabry disease pathway; galactose metabolic pathway; galactosemia pathway; ASSOCIATED WITH atopic dermatitis (ortholog); bone development disease (ortholog); contact dermatitis (ortholog); FOUND IN lysosome (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: beta-galactosidase
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11577,480,895 - 77,592,130 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1577,480,598 - 77,592,120 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604150,859,532 - 50,971,400 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
GLB1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11577,480,895 - 77,592,130 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1577,480,598 - 77,592,120 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604150,859,532 - 50,971,400 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
GLB1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38332,961,108 - 33,097,146 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl332,996,609 - 33,097,202 (-)EnsemblGRCh38hg38GRCh38
GRCh37333,002,600 - 33,138,638 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36333,013,104 - 33,113,698 (-)NCBINCBI36Build 36hg18NCBI36
Build 34333,013,234 - 33,113,632NCBI
Celera332,980,743 - 33,081,754 (-)NCBICelera
Cytogenetic Map3p22.3NCBI
HuRef332,977,821 - 33,078,667 (-)NCBIHuRef
CHM1_1332,988,097 - 33,088,744 (-)NCBICHM1_1
T2T-CHM13v2.0332,962,888 - 33,098,917 (-)NCBIT2T-CHM13v2.0
Glb1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399114,230,146 - 114,303,447 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl9114,230,144 - 114,303,966 (+)EnsemblGRCm39 Ensembl
GRCm389114,401,078 - 114,474,379 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9114,401,076 - 114,474,898 (+)EnsemblGRCm38mm10GRCm38
MGSCv379114,310,237 - 114,383,495 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv369114,249,817 - 114,323,075 (+)NCBIMGSCv36mm8
Celera9114,872,858 - 114,948,660 (+)NCBICelera
Cytogenetic Map9F3NCBI
cM Map964.4NCBI
Glb1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88122,963,718 - 123,036,326 (+)NCBIGRCr8
mRatBN7.28114,085,508 - 114,158,127 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl8114,085,508 - 114,158,127 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx8119,702,274 - 119,775,293 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.08117,901,534 - 117,974,533 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.08115,744,315 - 115,817,349 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.08122,439,328 - 122,511,939 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8122,439,328 - 122,511,939 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08121,752,146 - 121,824,793 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48118,791,550 - 118,864,281 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera8113,332,049 - 113,404,466 (+)NCBICelera
Cytogenetic Map8q32NCBI
Glb1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955421231,076 - 312,500 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955421230,957 - 311,504 (-)NCBIChiLan1.0ChiLan1.0
GLB1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2232,943,061 - 33,083,071 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1332,947,825 - 33,088,024 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0332,892,039 - 33,031,959 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1333,231,208 - 33,336,804 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl333,231,209 - 33,336,804 (-)Ensemblpanpan1.1panPan2
GLB1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1233,721,768 - 3,814,209 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl233,732,040 - 3,814,191 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha233,776,393 - 3,858,177 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0233,992,209 - 4,074,051 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl233,992,152 - 4,074,337 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1233,826,915 - 3,908,721 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0233,954,230 - 4,036,008 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0233,927,851 - 4,009,519 (+)NCBIUU_Cfam_GSD_1.0
Glb1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118190,209,844 - 190,301,836 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647323,348,416 - 23,440,196 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647323,348,431 - 23,440,271 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GLB1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1318,878,612 - 18,953,146 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11318,878,407 - 18,978,999 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Glb1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462478810,970,652 - 11,111,722 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462478810,970,657 - 11,110,839 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in GLB1
2804 total Variants

Expression

RNA-SEQ Expression

ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
reproductive system
76 36 20 36 36 60 20

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_008009389 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JACDXN010000009 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSCSAT00000007582   ⟹   ENSCSAP00000005757
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl1577,480,598 - 77,592,120 (-)Ensembl
RefSeq Acc Id: XM_008009389   ⟹   XP_008007580
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11577,480,895 - 77,592,130 (-)NCBI
Vero_WHO_p1.0NW_02366604150,859,532 - 50,971,400 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_008007580 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000005757.1
RefSeq Acc Id: XP_008007580   ⟸   XM_008009389
- UniProtKB: A0A0D9RAW8 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCSAP00000005757   ⟸   ENSCSAT00000007582


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000009502 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000007582.1 UniProtKB/TrEMBL
Gene3D-CATH Galactose-binding domain-like UniProtKB/TrEMBL
  Glycosidases UniProtKB/TrEMBL
InterPro B-gal_1-like UniProtKB/TrEMBL
  BetaGal1-like_ABD1 UniProtKB/TrEMBL
  BetaGal_gal-bd UniProtKB/TrEMBL
  Galactose-bd-like_sf UniProtKB/TrEMBL
  Gly_Hdrlase_35_cat UniProtKB/TrEMBL
  Glyco_hydro_35_CS UniProtKB/TrEMBL
  Glycoside_Hdrlase_35 UniProtKB/TrEMBL
  Glycoside_hydrolase_SF UniProtKB/TrEMBL
NCBI Gene GLB1 ENTREZGENE
PANTHER PTHR23421 UniProtKB/TrEMBL
Pfam BetaGal_ABD_1 UniProtKB/TrEMBL
  BetaGal_gal-bd UniProtKB/TrEMBL
  Glyco_hydro_35 UniProtKB/TrEMBL
PIRSF B-gal UniProtKB/TrEMBL
PRINTS GLHYDRLASE35 UniProtKB/TrEMBL
PROSITE GLYCOSYL_HYDROL_F35 UniProtKB/TrEMBL
Superfamily-SCOP SSF49785 UniProtKB/TrEMBL
  SSF51445 UniProtKB/TrEMBL
UniProt A0A0D9RAW8 ENTREZGENE, UniProtKB/TrEMBL