NYX (nyctalopin) - Rat Genome Database

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Gene: NYX (nyctalopin) Chlorocebus sabaeus
Analyze
Symbol: NYX
Name: nyctalopin
RGD ID: 18738025
Description: INVOLVED IN visual perception (ortholog); ASSOCIATED WITH autistic disorder (ortholog); congenital stationary night blindness (ortholog); congenital stationary night blindness 1A (ortholog); FOUND IN extracellular matrix (inferred); extracellular space (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X38,642,393 - 38,665,534 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660763,821,357 - 3,846,087 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
NYX
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X38,642,393 - 38,665,534 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660763,821,357 - 3,846,087 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
NYX
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X41,447,343 - 41,475,652 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX41,447,343 - 41,475,710 (+)EnsemblGRCh38hg38GRCh38
GRCh37X41,306,596 - 41,334,905 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36X41,191,631 - 41,219,907 (+)NCBINCBI36Build 36hg18NCBI36
Build 34X41,062,940 - 41,091,217NCBI
CeleraX45,447,487 - 45,475,680 (+)NCBICelera
Cytogenetic MapXp11.4NCBI
HuRefX39,038,027 - 39,066,404 (+)NCBIHuRef
CHM1_1X41,339,448 - 41,367,628 (+)NCBICHM1_1
T2T-CHM13v2.0X40,851,430 - 40,879,740 (+)NCBIT2T-CHM13v2.0
Nyx
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X13,327,097 - 13,359,059 (+)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX13,332,349 - 13,355,552 (+)EnsemblGRCm39 Ensembl
GRCm38X13,461,090 - 13,492,820 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX13,466,110 - 13,489,313 (+)EnsemblGRCm38mm10GRCm38
MGSCv37X13,044,798 - 13,066,439 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X12,623,066 - 12,646,271 (+)NCBIMGSCv36mm8
CeleraX11,137,534 - 11,158,769 (+)NCBICelera
Cytogenetic MapXA1.1NCBI
cM MapX8.37NCBI
Nyx
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X11,953,680 - 11,974,716 (-)NCBIGRCr8
mRatBN7.2X9,280,864 - 9,301,900 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX9,280,864 - 9,301,900 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_UtxX9,464,782 - 9,485,829 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X12,961,944 - 12,982,989 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X9,233,454 - 9,254,432 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X10,197,547 - 10,218,583 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX10,197,547 - 10,218,583 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X10,996,027 - 11,017,063 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X21,293,033 - 21,314,069 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
CeleraX9,819,177 - 9,840,154 (-)NCBICelera
Cytogenetic MapXq12NCBI
Nyx
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049555651,258,724 - 1,262,283 (-)NCBIChiLan1.0ChiLan1.0
NYX
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X43,097,839 - 43,127,194 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X43,101,212 - 43,130,567 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X33,899,010 - 33,928,363 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X41,617,437 - 41,619,042 (+)NCBIpanpan1.1PanPan1.1panPan2
NYX
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X35,849,190 - 35,868,048 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX23,197,511 - 23,216,363 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0X35,900,163 - 35,921,854 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1X35,977,493 - 35,996,375 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X35,949,667 - 35,968,502 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X35,992,826 - 36,011,691 (+)NCBIUU_Cfam_GSD_1.0
Nyx
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X28,049,848 - 28,070,063 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365027,890,535 - 7,910,986 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365027,890,582 - 7,909,157 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NYX
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX37,080,278 - 37,105,510 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X37,080,197 - 37,105,513 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X41,299,214 - 41,325,323 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Nyx
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476214,157,116 - 14,183,611 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476214,154,655 - 14,183,822 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_007991431 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JACDXN010000044 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: XM_007991431   ⟹   XP_007989622
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1X38,642,393 - 38,665,534 (+)NCBI
Vero_WHO_p1.0NW_0236660763,821,357 - 3,846,087 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_007989622 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000019057.1
RefSeq Acc Id: XP_007989622   ⟸   XM_007991431
- UniProtKB: A0A0D9SDW8 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000019558 UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000019648.1 UniProtKB/TrEMBL
Gene3D-CATH Ribonuclease Inhibitor UniProtKB/TrEMBL
InterPro Cys-rich_flank_reg_C UniProtKB/TrEMBL
  Leu-rich_rpt UniProtKB/TrEMBL
  Leu-rich_rpt_typical-subtyp UniProtKB/TrEMBL
  LRR_dom_sf UniProtKB/TrEMBL
NCBI Gene NYX ENTREZGENE
PANTHER NYCTALOPIN UniProtKB/TrEMBL
  SLIT RELATED LEUCINE-RICH REPEAT NEURONAL PROTEIN UniProtKB/TrEMBL
Pfam LRR_8 UniProtKB/TrEMBL
SMART LRR_TYP UniProtKB/TrEMBL
  LRRCT UniProtKB/TrEMBL
Superfamily-SCOP L domain-like UniProtKB/TrEMBL
UniProt A0A0D9SDW8 ENTREZGENE, UniProtKB/TrEMBL