UQCR10 (ubiquinol-cytochrome c reductase, complex III subunit X) - Rat Genome Database

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Gene: UQCR10 (ubiquinol-cytochrome c reductase, complex III subunit X) Chlorocebus sabaeus
Analyze
Symbol: UQCR10
Name: ubiquinol-cytochrome c reductase, complex III subunit X
RGD ID: 18737351
Description: INVOLVED IN mitochondrial electron transport, ubiquinol to cytochrome c (inferred); ASSOCIATED WITH Breast Cancer, Familial (ortholog); genetic disease (ortholog); vestibular schwannomatosis (ortholog); FOUND IN mitochondrial respiratory chain complex III (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: cytochrome b-c1 complex subunit 9
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11912,644,211 - 12,647,094 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1912,644,235 - 12,647,096 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666045113,502,096 - 113,505,226 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
UQCR10
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11912,644,211 - 12,647,094 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1912,644,235 - 12,647,096 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666045113,502,096 - 113,505,226 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
UQCR10
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382229,767,369 - 29,770,413 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2229,767,369 - 29,770,413 (+)EnsemblGRCh38hg38GRCh38
GRCh372230,163,358 - 30,166,402 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362228,493,358 - 28,496,402 (+)NCBINCBI36Build 36hg18NCBI36
Celera2213,963,088 - 13,966,132 (+)NCBICelera
Cytogenetic Map22q12.2ENTREZGENE
HuRef2213,126,973 - 13,130,017 (+)NCBIHuRef
CHM1_12230,122,543 - 30,125,587 (+)NCBICHM1_1
T2T-CHM13v2.02230,230,748 - 30,233,792 (+)NCBIT2T-CHM13v2.0
Uqcr10
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39114,651,968 - 4,654,344 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl114,651,973 - 4,654,342 (-)EnsemblGRCm39 Ensembl
GRCm38114,701,968 - 4,704,344 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl114,701,973 - 4,704,342 (-)EnsemblGRCm38mm10GRCm38
MGSCv37114,601,971 - 4,604,347 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36114,601,976 - 4,604,331 (-)NCBIMGSCv36mm8
Celera115,200,861 - 5,203,237 (-)NCBICelera
Cytogenetic Map11A1NCBI
cM Map112.96NCBI
Uqcr10
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81483,789,657 - 83,791,914 (-)NCBIGRCr8
mRatBN7.21479,566,151 - 79,569,017 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1479,566,157 - 79,569,003 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1483,996,709 - 83,998,967 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01485,236,781 - 85,239,039 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01481,686,458 - 81,688,716 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01484,935,480 - 84,937,741 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1484,935,486 - 84,937,725 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01485,614,330 - 85,614,509 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41485,353,763 - 85,353,942 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1478,471,580 - 78,473,837 (-)NCBICelera
Cytogenetic Map14q21NCBI
LOC102011733
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554554,013,134 - 4,018,570 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554554,013,197 - 4,015,448 (+)NCBIChiLan1.0ChiLan1.0
LOC100968432
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22339,739,065 - 39,741,623 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12242,440,058 - 42,442,945 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02210,810,858 - 10,813,466 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12228,615,583 - 28,618,426 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2228,615,583 - 28,618,426 (+)Ensemblpanpan1.1panPan2
UQCR10
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12622,953,336 - 22,955,569 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2622,953,331 - 22,955,569 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2622,824,297 - 22,826,530 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02623,326,845 - 23,329,078 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.12623,037,052 - 23,039,286 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02623,299,598 - 23,301,831 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02623,359,368 - 23,361,602 (+)NCBIUU_Cfam_GSD_1.0
LOC101968471
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118112,181,977 - 112,184,687 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366573,685,962 - 3,690,273 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366573,686,019 - 3,688,730 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
UQCR10
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1446,783,325 - 46,786,140 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11446,783,340 - 46,786,140 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21449,817,593 - 49,820,393 (+)NCBISscrofa10.2Sscrofa10.2susScr3
LOC101708617
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247476,080,740 - 6,082,926 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247476,080,725 - 6,083,065 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium 36 20 60
Low
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSCSAT00000007682   ⟹   ENSCSAP00000005856
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl1912,644,235 - 12,647,096 (+)Ensembl
RefSeq Acc Id: XM_007975351   ⟹   XP_007973542
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11912,644,218 - 12,647,094 (+)NCBI
Vero_WHO_p1.0NW_023666045113,502,096 - 113,505,226 (-)NCBI
Sequence:
RefSeq Acc Id: XM_007975353   ⟹   XP_007973544
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11912,644,211 - 12,647,094 (+)NCBI
Vero_WHO_p1.0NW_023666045113,502,096 - 113,504,987 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_007973542 (Get FASTA)   NCBI Sequence Viewer  
  XP_007973544 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000005856
  ENSCSAP00000005856.1
Reference Protein Sequences
RefSeq Acc Id: XP_007973544   ⟸   XM_007975353
- Peptide Label: isoform X2
RefSeq Acc Id: XP_007973542   ⟸   XM_007975351
- Peptide Label: isoform X1
- UniProtKB: A0A0D9RB67 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCSAP00000005856   ⟸   ENSCSAT00000007682


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000009605 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000007682.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.5.260 UniProtKB/TrEMBL
InterPro QCR9 UniProtKB/TrEMBL
  QCR9_sf UniProtKB/TrEMBL
KEGG Report csab:103223148 UniProtKB/TrEMBL
NCBI Gene UQCR10 ENTREZGENE
PANTHER CYTOCHROME B-C1 COMPLEX SUBUNIT 9 UniProtKB/TrEMBL
  PTHR12980 UniProtKB/TrEMBL
Pfam UCR_UQCRX_QCR9 UniProtKB/TrEMBL
Superfamily-SCOP SSF81514 UniProtKB/TrEMBL
UniProt A0A0D9RB67 ENTREZGENE, UniProtKB/TrEMBL