KLHL11 (kelch like family member 11) - Rat Genome Database

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Gene: KLHL11 (kelch like family member 11) Chlorocebus sabaeus
Analyze
Symbol: KLHL11
Name: kelch like family member 11
RGD ID: 18734255
Description: ASSOCIATED WITH genetic disease (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: kelch-like protein 11
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11664,394,829 - 64,407,252 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1664,394,926 - 64,407,057 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607735,222,630 - 35,235,028 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
KLHL11
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11664,394,829 - 64,407,252 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1664,394,926 - 64,407,057 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607735,222,630 - 35,235,028 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
KLHL11
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381741,848,518 - 41,865,423 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1741,848,518 - 41,865,423 (-)EnsemblGRCh38hg38GRCh38
GRCh371740,004,770 - 40,021,676 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361737,263,325 - 37,275,155 (-)NCBINCBI36Build 36hg18NCBI36
Build 341737,263,324 - 37,275,155NCBI
Celera1736,661,140 - 36,672,965 (-)NCBICelera
Cytogenetic Map17q21.2NCBI
HuRef1735,771,767 - 35,783,595 (-)NCBIHuRef
CHM1_11740,245,409 - 40,257,238 (-)NCBICHM1_1
T2T-CHM13v2.01742,705,069 - 42,721,974 (-)NCBIT2T-CHM13v2.0
Klhl11
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911100,347,948 - 100,363,608 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl11100,353,440 - 100,363,567 (-)EnsemblGRCm39 Ensembl
GRCm3811100,457,122 - 100,472,782 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11100,462,614 - 100,472,741 (-)EnsemblGRCm38mm10GRCm38
MGSCv3711100,323,926 - 100,334,096 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3611100,278,702 - 100,288,872 (-)NCBIMGSCv36mm8
Celera11111,081,002 - 111,091,173 (-)NCBICelera
Cytogenetic Map11DNCBI
cM Map1163.47NCBI
Klhl11
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81085,898,847 - 85,909,406 (-)NCBIGRCr8
mRatBN7.21085,398,487 - 85,409,049 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1085,398,487 - 85,409,049 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1090,434,644 - 90,445,274 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01089,913,919 - 89,924,526 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01085,306,760 - 85,317,319 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01088,378,695 - 88,389,252 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1088,378,751 - 88,389,347 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01088,171,942 - 88,182,499 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41089,407,380 - 89,417,938 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11089,422,004 - 89,432,205 (-)NCBI
Celera1084,115,843 - 84,126,403 (-)NCBICelera
Cytogenetic Map10q31NCBI
Klhl11
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545116,051,145 - 16,055,975 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495545116,051,145 - 16,055,975 (-)NCBIChiLan1.0ChiLan1.0
KLHL11
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21923,115,317 - 23,133,414 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11725,005,489 - 25,023,584 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01715,448,049 - 15,465,373 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11715,666,845 - 15,683,982 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1715,666,845 - 15,678,757 (+)Ensemblpanpan1.1panPan2
KLHL11
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1920,975,719 - 20,983,703 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl920,975,785 - 20,979,857 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha920,436,235 - 20,446,477 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0921,694,725 - 21,704,990 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl921,694,487 - 21,704,990 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1920,480,331 - 20,490,827 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0920,746,684 - 20,756,949 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0920,850,563 - 20,860,841 (+)NCBIUU_Cfam_GSD_1.0
Klhl11
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560220,318,448 - 20,329,387 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493649016,745,694 - 16,757,149 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493649016,749,485 - 16,756,677 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
KLHL11
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1220,842,393 - 20,852,980 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11220,842,102 - 20,854,344 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Klhl11
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247951,911,602 - 1,920,066 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247951,911,630 - 1,922,525 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium 15 55
Low 21 20 5
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_008012688 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JACDXN010000045 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSCSAT00000001067   ⟹   ENSCSAP00000015001
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl1664,394,926 - 64,407,057 (+)Ensembl
RefSeq Acc Id: XM_008012688   ⟹   XP_008010879
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11664,394,829 - 64,407,252 (+)NCBI
Vero_WHO_p1.0NW_02366607735,222,630 - 35,235,028 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_008010879 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000015001
  ENSCSAP00000015001.1
RefSeq Acc Id: XP_008010879   ⟸   XM_008012688
RefSeq Acc Id: ENSCSAP00000015001   ⟸   ENSCSAT00000001067


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000003041 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000001067.1 UniProtKB/TrEMBL
Gene3D-CATH 1.25.40.420 UniProtKB/TrEMBL
  2.120.10.80 UniProtKB/TrEMBL
InterPro BACK UniProtKB/TrEMBL
  BTB/POZ_dom UniProtKB/TrEMBL
  Kelch-typ_b-propeller UniProtKB/TrEMBL
  Kelch_1 UniProtKB/TrEMBL
  SKP1/BTB/POZ_sf UniProtKB/TrEMBL
NCBI Gene KLHL11 ENTREZGENE
PANTHER KELCH PROTEIN UniProtKB/TrEMBL
  KELCH-LIKE PROTEIN 11 UniProtKB/TrEMBL
Pfam BACK UniProtKB/TrEMBL
  BTB UniProtKB/TrEMBL
  Kelch_1 UniProtKB/TrEMBL
PROSITE BTB UniProtKB/TrEMBL
SMART BACK UniProtKB/TrEMBL
  BTB UniProtKB/TrEMBL
  Kelch UniProtKB/TrEMBL
Superfamily-SCOP SSF117281 UniProtKB/TrEMBL
  SSF54695 UniProtKB/TrEMBL
UniProt A0A0D9S2B2_CHLSB UniProtKB/TrEMBL