MRPL17 (mitochondrial ribosomal protein L17) - Rat Genome Database

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Gene: MRPL17 (mitochondrial ribosomal protein L17) Chlorocebus sabaeus
Analyze
Symbol: MRPL17
Name: mitochondrial ribosomal protein L17
RGD ID: 18734060
Description: ENCODES a protein that exhibits protein domain specific binding (inferred); structural constituent of ribosome (inferred); INVOLVED IN translation (inferred); ASSOCIATED WITH genetic disease (ortholog); FOUND IN cytosolic large ribosomal subunit (inferred); mitochondrial large ribosomal subunit (inferred); mitochondrion (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: 39S ribosomal protein L17, mitochondrial
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1158,143,250 - 58,144,711 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl158,143,235 - 58,144,557 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666038155,968,827 - 155,970,505 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
translation  (IEA)

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
MRPL17
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1158,143,250 - 58,144,711 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl158,143,235 - 58,144,557 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666038155,968,827 - 155,970,505 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
MRPL17
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38116,680,385 - 6,683,340 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl116,680,385 - 6,683,340 (-)EnsemblGRCh38hg38GRCh38
GRCh37116,701,616 - 6,704,571 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36116,659,456 - 6,661,150 (-)NCBINCBI36Build 36hg18NCBI36
Build 34116,659,455 - 6,661,150NCBI
Celera116,820,715 - 6,823,731 (-)NCBICelera
Cytogenetic Map11p15.4NCBI
HuRef116,360,173 - 6,363,189 (-)NCBIHuRef
CHM1_1116,700,534 - 6,703,550 (-)NCBICHM1_1
T2T-CHM13v2.0116,738,851 - 6,741,807 (-)NCBIT2T-CHM13v2.0
Mrpl17
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397105,452,989 - 105,460,294 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl7105,452,413 - 105,460,306 (-)EnsemblGRCm39 Ensembl
GRCm387105,803,782 - 105,811,087 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7105,803,206 - 105,811,099 (-)EnsemblGRCm38mm10GRCm38
MGSCv377112,952,296 - 112,959,601 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv367105,677,603 - 105,684,908 (-)NCBIMGSCv36mm8
Celera7106,075,167 - 106,082,470 (-)NCBICelera
Cytogenetic Map7E3NCBI
cM Map755.98NCBI
Mrpl17
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81169,574,010 - 169,575,699 (-)NCBIGRCr8
mRatBN7.21160,162,181 - 160,163,870 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1160,158,807 - 160,163,815 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1168,184,743 - 168,186,432 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01175,370,740 - 175,372,429 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01168,272,508 - 168,274,197 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01170,652,293 - 170,653,982 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1170,652,294 - 170,653,920 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01177,657,943 - 177,659,517 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41163,554,720 - 163,556,294 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11163,650,196 - 163,651,771 (-)NCBI
Celera1158,093,967 - 158,095,656 (-)NCBICelera
Cytogenetic Map1q32NCBI
Mrpl17
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541422,387,045 - 22,388,725 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541422,386,762 - 22,388,772 (-)NCBIChiLan1.0ChiLan1.0
MRPL17
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v299,121,510 - 9,123,312 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1119,085,604 - 9,087,406 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0116,815,229 - 6,817,842 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1116,499,142 - 6,500,718 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl116,499,142 - 6,500,718 (-)Ensemblpanpan1.1panPan2
MRPL17
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12129,989,103 - 29,990,646 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2129,989,209 - 29,991,378 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2129,687,522 - 29,692,522 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02130,811,739 - 30,816,734 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2130,753,914 - 30,816,785 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12130,132,429 - 30,137,418 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02130,298,287 - 30,303,275 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02130,493,634 - 30,498,621 (-)NCBIUU_Cfam_GSD_1.0
Mrpl17
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494755,933,848 - 55,971,127 (+)NCBIHiC_Itri_2
SpeTri2.0NW_004936842736,736 - 741,638 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MRPL17
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl93,075,995 - 3,083,580 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.193,075,986 - 3,077,859 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.293,733,341 - 3,735,216 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Mrpl17
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248178,182,427 - 8,184,052 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248178,180,264 - 8,184,066 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium 36 18 60
Low 2
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_008008414 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JACDXN010000006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSCSAT00000002395   ⟹   ENSCSAP00000000709
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl158,143,235 - 58,144,557 (+)Ensembl
RefSeq Acc Id: XM_008008414   ⟹   XP_008006605
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1158,143,250 - 58,144,711 (+)NCBI
Vero_WHO_p1.0NW_023666038155,968,827 - 155,970,505 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_008006605 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000000709
  ENSCSAP00000000709.1
Reference Protein Sequences
RefSeq Acc Id: XP_008006605   ⟸   XM_008008414
- UniProtKB: A0A0D9QWH0 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCSAP00000000709   ⟸   ENSCSAT00000002395


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000004367 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000002395.1 UniProtKB/TrEMBL
Gene3D-CATH 3.90.1030.10 UniProtKB/TrEMBL
InterPro Ribosomal_L17 UniProtKB/TrEMBL
  Ribosomal_L17_sf UniProtKB/TrEMBL
KEGG Report csab:103241280 UniProtKB/TrEMBL
NCBI Gene MRPL17 ENTREZGENE
PANTHER 39S RIBOSOMAL PROTEIN L17, MITOCHONDRIAL UniProtKB/TrEMBL
  PTHR14413 UniProtKB/TrEMBL
Pfam Ribosomal_L17 UniProtKB/TrEMBL
Superfamily-SCOP SSF64263 UniProtKB/TrEMBL
UniProt A0A0D9QWH0 ENTREZGENE, UniProtKB/TrEMBL