FBXO9 (F-box protein 9) - Rat Genome Database

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Gene: FBXO9 (F-box protein 9) Chlorocebus sabaeus
Analyze
Symbol: FBXO9
Name: F-box protein 9
RGD ID: 18733670
Description: ENCODES a protein that exhibits ubiquitin-like ligase-substrate adaptor activity (inferred); INVOLVED IN fat cell differentiation (ortholog); innate immune response (ortholog); ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); genetic disease (ortholog); FOUND IN cytoplasm (inferred); SCF ubiquitin ligase complex (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: F-box only protein 9
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11719,472,653 - 19,509,783 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1719,469,964 - 19,506,033 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604452,911,492 - 52,948,878 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
FBXO9
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11719,472,653 - 19,509,783 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1719,469,964 - 19,506,033 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604452,911,492 - 52,948,878 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
FBXO9
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38653,064,998 - 53,100,873 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl653,051,991 - 53,100,873 (+)EnsemblGRCh38hg38GRCh38
GRCh37652,929,796 - 52,965,671 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36653,037,755 - 53,073,630 (+)NCBINCBI36Build 36hg18NCBI36
Build 34653,037,754 - 53,072,342NCBI
Celera654,591,593 - 54,627,465 (+)NCBICelera
Cytogenetic Map6p12.1NCBI
HuRef652,761,360 - 52,797,210 (+)NCBIHuRef
CHM1_1652,931,587 - 52,967,433 (+)NCBICHM1_1
T2T-CHM13v2.0652,904,603 - 52,940,463 (+)NCBIT2T-CHM13v2.0
Fbxo9
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39977,988,781 - 78,016,347 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl977,988,781 - 78,016,347 (-)EnsemblGRCm39 Ensembl
GRCm38978,081,499 - 78,109,065 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl978,081,499 - 78,109,065 (-)EnsemblGRCm38mm10GRCm38
MGSCv37977,929,306 - 77,956,860 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36977,867,182 - 77,894,309 (-)NCBIMGSCv36mm8
Celera975,258,725 - 75,286,256 (-)NCBICelera
Cytogenetic Map9E1NCBI
cM Map943.53NCBI
Fbxo9
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8887,838,787 - 87,864,362 (-)NCBIGRCr8
mRatBN7.2878,958,482 - 78,984,015 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl878,958,483 - 78,983,949 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx884,445,446 - 84,470,413 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0882,722,097 - 82,747,064 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0880,544,818 - 80,569,787 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0885,388,331 - 85,413,896 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl885,388,333 - 85,413,484 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0884,953,188 - 84,978,726 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4883,056,071 - 83,081,992 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1883,075,126 - 83,101,046 (-)NCBI
Celera878,703,574 - 78,728,540 (-)NCBICelera
Cytogenetic Map8q31NCBI
Fbxo9
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554112,961,160 - 2,995,097 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554112,960,517 - 2,993,787 (-)NCBIChiLan1.0ChiLan1.0
FBXO9
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2567,536,890 - 67,569,182 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1663,413,560 - 63,448,339 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0652,621,036 - 52,652,980 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1654,259,044 - 54,291,216 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl654,259,044 - 54,291,207 (+)Ensemblpanpan1.1panPan2
FBXO9
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11220,514,590 - 20,562,507 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1220,514,590 - 20,562,498 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1220,408,930 - 20,456,855 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01221,011,554 - 21,060,480 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1221,011,525 - 21,060,478 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11220,516,927 - 20,565,226 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01220,621,623 - 20,670,073 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01220,758,978 - 20,807,342 (+)NCBIUU_Cfam_GSD_1.0
Fbxo9
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494656,150,528 - 56,190,847 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364767,769,295 - 7,810,235 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364767,769,355 - 7,809,688 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FBXO9
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl746,723,680 - 46,748,121 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1746,723,579 - 46,748,132 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.27134,465,992 - 134,490,747 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Fbxo9
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624850287,586 - 336,827 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624850287,585 - 335,939 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium 36 20 60
Low
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSCSAT00000011232   ⟹   ENSCSAP00000009313
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl1719,469,964 - 19,506,033 (-)Ensembl
RefSeq Acc Id: XM_007972242   ⟹   XP_007970433
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11719,472,653 - 19,500,837 (-)NCBI
Vero_WHO_p1.0NW_02366604452,915,146 - 52,948,878 (+)NCBI
Sequence:
RefSeq Acc Id: XM_007972244   ⟹   XP_007970435
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11719,472,653 - 19,509,783 (-)NCBI
Vero_WHO_p1.0NW_02366604452,911,492 - 52,948,459 (+)NCBI
Sequence:
RefSeq Acc Id: XM_007972245   ⟹   XP_007970436
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11719,472,653 - 19,505,673 (-)NCBI
Vero_WHO_p1.0NW_02366604452,915,472 - 52,948,459 (+)NCBI
Sequence:
RefSeq Acc Id: XM_038006182   ⟹   XP_037862110
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366604452,915,655 - 52,948,459 (+)NCBI
Protein Sequences
Protein RefSeqs XP_007970433 (Get FASTA)   NCBI Sequence Viewer  
  XP_007970435 (Get FASTA)   NCBI Sequence Viewer  
  XP_007970436 (Get FASTA)   NCBI Sequence Viewer  
  XP_037862110 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000009313.1
Reference Protein Sequences
RefSeq Acc Id: XP_007970435   ⟸   XM_007972244
- Peptide Label: isoform X2
RefSeq Acc Id: XP_007970436   ⟸   XM_007972245
- Peptide Label: isoform X2
RefSeq Acc Id: XP_007970433   ⟸   XM_007972242
- Peptide Label: isoform X1
- UniProtKB: A0A0D9RL24 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCSAP00000009313   ⟸   ENSCSAT00000011232
RefSeq Acc Id: XP_037862110   ⟸   XM_038006182
- Peptide Label: isoform X2


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000013142 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000011232.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.1280.50 UniProtKB/TrEMBL
InterPro F-box-like_dom_sf UniProtKB/TrEMBL
  F-box_dom UniProtKB/TrEMBL
  FBXO9/FBXO48 UniProtKB/TrEMBL
  Hrt3/FBXO9_C UniProtKB/TrEMBL
  MIT_dom_sf UniProtKB/TrEMBL
NCBI Gene FBXO9 ENTREZGENE
PANTHER F-BOX ONLY PROTEIN 9 UniProtKB/TrEMBL
  PTHR12874 UniProtKB/TrEMBL
Pfam F-box-like UniProtKB/TrEMBL
  FBO_C UniProtKB/TrEMBL
PROSITE FBOX UniProtKB/TrEMBL
Superfamily-SCOP SSF116846 UniProtKB/TrEMBL
  SSF81383 UniProtKB/TrEMBL
UniProt A0A0D9RL24 ENTREZGENE, UniProtKB/TrEMBL