SUPT7L (SPT7 like, STAGA complex subunit gamma) - Rat Genome Database

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Pathways
Gene: SUPT7L (SPT7 like, STAGA complex subunit gamma) Chlorocebus sabaeus
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Symbol: SUPT7L
Name: SPT7 like, STAGA complex subunit gamma
RGD ID: 18729165
Description: ENCODES a protein that exhibits protein heterodimerization activity (inferred); transcription coactivator activity (inferred); INVOLVED IN maintenance of protein location in nucleus (inferred); positive regulation of DNA-templated transcription (inferred); PARTICIPATES IN RNA polymerase II transcription initiation pathway; ASSOCIATED WITH FISCHER-ZIRNSAK PROGEROID SYNDROME (ortholog); Tatton-Brown-Rahman syndrome (ortholog); FOUND IN nucleoplasm (inferred); nucleus (inferred); SAGA complex (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: SPT7 like, STAGA complex gamma subunit; STAGA complex 65 subunit gamma
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11479,965,583 - 79,977,693 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1479,966,684 - 79,980,864 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604532,172,696 - 32,184,594 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleoplasm  (IEA)
nucleus  (IEA)
SAGA complex  (IEA)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
SUPT7L
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11479,965,583 - 79,977,693 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1479,966,684 - 79,980,864 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604532,172,696 - 32,184,594 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
SUPT7L
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38227,642,568 - 27,663,614 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl227,650,809 - 27,663,840 (-)Ensemblhg38GRCh38
GRCh37227,873,676 - 27,886,481 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36227,727,183 - 27,739,953 (-)NCBIBuild 36Build 36hg18NCBI36
Celera227,719,150 - 27,731,920 (-)NCBICelera
Cytogenetic Map2p23.3NCBI
HuRef227,614,635 - 27,627,405 (-)NCBIHuRef
CHM1_1227,804,418 - 27,817,184 (-)NCBICHM1_1
T2T-CHM13v2.0227,685,653 - 27,706,702 (-)NCBIT2T-CHM13v2.0
Supt7l
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39531,671,913 - 31,684,106 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl531,671,908 - 31,685,151 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm38531,514,569 - 31,526,762 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl531,514,564 - 31,527,807 (-)Ensemblmm10GRCm38
MGSCv37531,816,942 - 31,829,135 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36531,791,150 - 31,803,266 (-)NCBIMGSCv36mm8
Celera528,993,458 - 29,005,651 (-)NCBICelera
Cytogenetic Map5B1NCBI
cM Map517.27NCBI
Supt7l
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8630,653,928 - 30,664,066 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl630,653,888 - 30,664,642 (+)EnsemblGRCr8
mRatBN7.2624,933,941 - 24,944,656 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl624,933,923 - 24,944,654 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx625,234,790 - 25,244,932 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0625,550,689 - 25,560,829 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0625,029,913 - 25,040,042 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0626,241,672 - 26,251,810 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl626,241,672 - 26,251,809 (+)Ensemblrn6Rnor6.0
Rnor_5.0636,065,222 - 36,075,360 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4624,994,268 - 25,004,406 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera624,428,645 - 24,438,783 (+)NCBICelera
Cytogenetic Map6q14NCBI
Supt7l
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554699,601,767 - 9,617,188 (-)Ensembl
ChiLan1.0NW_0049554699,584,863 - 9,617,194 (-)NCBIChiLan1.0ChiLan1.0
SUPT7L
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21298,852,384 - 98,863,164 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A98,856,710 - 98,867,133 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A27,648,724 - 27,661,760 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A27,734,763 - 27,747,802 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A27,734,763 - 27,747,802 (-)EnsemblpanPan2panpan1.1
LOC475708
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11721,550,614 - 21,580,113 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1721,566,827 - 21,688,006 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1721,454,676 - 21,483,948 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
Supt7l
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629265,869,698 - 65,879,856 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364934,960,420 - 4,973,452 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049364934,959,725 - 4,969,780 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SUPT7L
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl3111,531,689 - 111,542,000 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.13111,531,670 - 111,542,000 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.23118,497,761 - 118,507,867 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Supt7l
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247389,675,056 - 9,682,685 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046247389,673,966 - 9,684,706 (-)NCBIHetGla 1.0HetGla 1.0hetGla2

Variants

.
Variants in SUPT7L
187 total Variants

Expression

RNA-SEQ Expression

ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
reproductive system
76 36 20 36 36 60 20

Sequence


Ensembl Acc Id: ENSCSAT00000008337   ⟹   ENSCSAP00000006481
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl1479,966,684 - 79,980,864 (+)Ensembl
RefSeq Acc Id: XM_007971095   ⟹   XP_007969286
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11479,965,583 - 79,977,693 (+)NCBI
Vero_WHO_p1.0NW_02366604532,172,696 - 32,184,561 (-)NCBI
Sequence:
RefSeq Acc Id: XM_007971096   ⟹   XP_007969287
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11479,965,583 - 79,977,693 (+)NCBI
Vero_WHO_p1.0NW_02366604532,172,696 - 32,184,561 (-)NCBI
Sequence:
RefSeq Acc Id: XM_007971097   ⟹   XP_007969288
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11479,965,718 - 79,977,558 (+)NCBI
Vero_WHO_p1.0NW_02366604532,173,412 - 32,184,594 (-)NCBI
Sequence:
RefSeq Acc Id: XM_007971098   ⟹   XP_007969289
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11479,965,583 - 79,977,693 (+)NCBI
Vero_WHO_p1.0NW_02366604532,172,696 - 32,184,586 (-)NCBI
Sequence:
RefSeq Acc Id: XM_007971099   ⟹   XP_007969290
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11479,965,718 - 79,977,558 (+)NCBI
Vero_WHO_p1.0NW_02366604532,173,412 - 32,184,508 (-)NCBI
Sequence:
RefSeq Acc Id: XM_007971100   ⟹   XP_007969291
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11479,965,583 - 79,977,693 (+)NCBI
Vero_WHO_p1.0NW_02366604532,172,696 - 32,184,561 (-)NCBI
Sequence:
RefSeq Acc Id: XM_007971101   ⟹   XP_007969292
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11479,965,583 - 79,977,693 (+)NCBI
Vero_WHO_p1.0NW_02366604532,172,696 - 32,184,570 (-)NCBI
Sequence:
RefSeq Acc Id: XM_038006727   ⟹   XP_037862655
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366604532,173,412 - 32,184,409 (-)NCBI
RefSeq Acc Id: XM_038006728   ⟹   XP_037862656
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366604532,173,412 - 32,184,409 (-)NCBI
RefSeq Acc Id: XM_038006729   ⟹   XP_037862657
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366604532,173,412 - 32,184,594 (-)NCBI
RefSeq Acc Id: XM_038006730   ⟹   XP_037862658
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366604532,173,412 - 32,184,409 (-)NCBI
RefSeq Acc Id: XP_007969287   ⟸   XM_007971096
- Peptide Label: isoform X1
- UniProtKB: A0A0D9RCZ2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_007969289   ⟸   XM_007971098
- Peptide Label: isoform X2
RefSeq Acc Id: XP_007969291   ⟸   XM_007971100
- Peptide Label: isoform X2
RefSeq Acc Id: XP_007969286   ⟸   XM_007971095
- Peptide Label: isoform X1
- UniProtKB: A0A0D9RCZ2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_007969292   ⟸   XM_007971101
- Peptide Label: isoform X3
RefSeq Acc Id: XP_007969290   ⟸   XM_007971099
- Peptide Label: isoform X2
RefSeq Acc Id: XP_007969288   ⟸   XM_007971097
- Peptide Label: isoform X1
- UniProtKB: A0A0D9RCZ2 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCSAP00000006481   ⟸   ENSCSAT00000008337
RefSeq Acc Id: XP_037862657   ⟸   XM_038006729
- Peptide Label: isoform X3
RefSeq Acc Id: XP_037862658   ⟸   XM_038006730
- Peptide Label: isoform X3
RefSeq Acc Id: XP_037862656   ⟸   XM_038006728
- Peptide Label: isoform X2
RefSeq Acc Id: XP_037862655   ⟸   XM_038006727
- Peptide Label: isoform X2


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000010248 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000008337.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.20.10 UniProtKB/TrEMBL
InterPro BTP UniProtKB/TrEMBL
  Histone-fold UniProtKB/TrEMBL
  SUPT7L UniProtKB/TrEMBL
KEGG Report csab:103220584 UniProtKB/TrEMBL
NCBI Gene SUPT7L ENTREZGENE
PANTHER PTHR28598 UniProtKB/TrEMBL
  STAGA COMPLEX 65 SUBUNIT GAMMA UniProtKB/TrEMBL
Pfam Bromo_TP UniProtKB/TrEMBL
SMART BTP UniProtKB/TrEMBL
UniProt A0A0D9RCZ2 ENTREZGENE, UniProtKB/TrEMBL