FRAT2 (FRAT regulator of WNT signaling pathway 2) - Rat Genome Database

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Gene: FRAT2 (FRAT regulator of WNT signaling pathway 2) Chlorocebus sabaeus
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Symbol: FRAT2
Name: FRAT regulator of WNT signaling pathway 2
RGD ID: 18726905
Description: INVOLVED IN Wnt signaling pathway (ortholog); ASSOCIATED WITH genetic disease (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: FRAT2, WNT signaling pathway regulator; frequently rearranged in advanced T-cell lymphomas 2; GSK-3-binding protein FRAT2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Alliance Genes
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1990,506,288 - 90,509,061 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604851,402,271 - 51,405,017 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
FRAT2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1990,506,288 - 90,509,061 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604851,402,271 - 51,405,017 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
FRAT2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381097,332,497 - 97,334,729 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1097,332,497 - 97,334,729 (-)EnsemblGRCh38hg38GRCh38
GRCh371099,092,254 - 99,094,486 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361099,082,244 - 99,084,448 (-)NCBINCBI36Build 36hg18NCBI36
Build 341099,082,243 - 99,084,448NCBI
Celera1092,830,738 - 92,832,937 (-)NCBICelera
Cytogenetic Map10q24.1NCBI
HuRef1092,717,931 - 92,720,135 (-)NCBIHuRef
CHM1_11099,373,988 - 99,376,192 (-)NCBICHM1_1
T2T-CHM13v2.01098,212,697 - 98,214,929 (-)NCBIT2T-CHM13v2.0
Frat2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391941,834,411 - 41,836,571 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1941,834,411 - 41,836,571 (-)EnsemblGRCm39 Ensembl
GRCm381941,845,972 - 41,848,132 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1941,845,972 - 41,848,132 (-)EnsemblGRCm38mm10GRCm38
MGSCv371941,920,462 - 41,922,622 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361941,899,289 - 41,901,443 (-)NCBIMGSCv36mm8
Celera1942,645,030 - 42,647,229 (-)NCBICelera
Cytogenetic Map19C3NCBI
cM Map1935.33NCBI
Frat2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81250,603,450 - 250,605,779 (-)NCBIGRCr8
mRatBN7.21240,654,120 - 240,656,449 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1240,654,137 - 240,656,517 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1248,799,350 - 248,801,632 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01255,496,504 - 255,498,786 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01248,149,515 - 248,151,797 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01261,088,504 - 261,091,690 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1261,089,745 - 261,090,437 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01268,540,976 - 268,543,802 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera1236,491,102 - 236,492,213 (-)NCBICelera
Cytogenetic Map1q54NCBI
Frat2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049555073,498,193 - 3,500,240 (-)NCBIChiLan1.0ChiLan1.0
FRAT2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v28109,249,362 - 109,251,769 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan110109,254,681 - 109,257,088 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01093,957,722 - 93,960,129 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11097,450,041 - 97,452,214 (-)NCBIpanpan1.1PanPan1.1panPan2
Frat2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721336,275,156 - 36,277,450 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366362,314,502 - 2,315,195 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366362,314,004 - 2,316,566 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FRAT2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl14108,752,677 - 108,754,964 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.114108,752,673 - 108,755,154 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_007963732 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JACDXN010000016 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_007963732   ⟹   XP_007961923
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1990,506,288 - 90,509,061 (-)NCBI
Vero_WHO_p1.0NW_02366604851,402,271 - 51,405,017 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_007961923 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_007961923   ⟸   XM_007963732


Additional Information

Database Acc Id Source(s)
NCBI Gene FRAT2 ENTREZGENE