LOC103233057 (C-C motif chemokine 22) - Rat Genome Database

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Pathways
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Gene: LOC103233057 (C-C motif chemokine 22) Chlorocebus sabaeus
Analyze
Symbol: LOC103233057 (Ensembl: CCL22)
Name: C-C motif chemokine 22 (Ensembl:C-C motif chemokine ligand 22)
RGD ID: 18720726
Description: ENCODES a protein that exhibits chemokine activity (inferred); cytokine activity (inferred); INVOLVED IN cell chemotaxis (inferred); chemotaxis (inferred); eosinophil chemotaxis (inferred); ASSOCIATED WITH anti-basement membrane glomerulonephritis (ortholog); asthma (ortholog); Pain (ortholog); FOUND IN extracellular region (inferred); extracellular space (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: C-C motif chemokine ligand 22; CCL22
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1543,297,206 - 43,305,662 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl543,297,897 - 43,305,642 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604732,922,605 - 32,927,750 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium
Low 16 14 4
Below cutoff 18 4 21

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_007993432 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JACDXN010000015 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSCSAT00000002951   ⟹   ENSCSAP00000001243
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl543,297,897 - 43,305,642 (+)Ensembl
RefSeq Acc Id: XM_007993432   ⟹   XP_007991623
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1543,297,206 - 43,305,662 (+)NCBI
Vero_WHO_p1.0NW_02366604732,922,605 - 32,927,750 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_007991623 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000001243.1
Reference Protein Sequences
RefSeq Acc Id: XP_007991623   ⟸   XM_007993432
RefSeq Acc Id: ENSCSAP00000001243   ⟸   ENSCSAT00000002951


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000004920 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000002951.1 UniProtKB/TrEMBL
Gene3D-CATH 2.40.50.40 UniProtKB/TrEMBL
InterPro Chemokine_b/g/d UniProtKB/TrEMBL
  Chemokine_IL8-like_dom UniProtKB/TrEMBL
  Interleukin_8-like_sf UniProtKB/TrEMBL
KEGG Report csab:103233057 UniProtKB/TrEMBL
NCBI Gene CCL22 ENTREZGENE
PANTHER PTHR12015 UniProtKB/TrEMBL
  PTHR12015:SF102 UniProtKB/TrEMBL
Pfam IL8 UniProtKB/TrEMBL
PRINTS INTERLEUKIN8 UniProtKB/TrEMBL
SMART SCY UniProtKB/TrEMBL
Superfamily-SCOP SSF54117 UniProtKB/TrEMBL
UniProt A0A0D9QY04_CHLSB UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-12-08 LOC103233057  C-C motif chemokine 22  CCL22  C-C motif chemokine ligand 22  Symbol and/or name change 5135510 APPROVED