CDC42EP3 (CDC42 effector protein 3) - Rat Genome Database
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Gene: CDC42EP3 (CDC42 effector protein 3) Chlorocebus sabaeus
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Symbol: CDC42EP3
Name: CDC42 effector protein 3
RGD ID: 18718806
Description: FOUND IN actin cytoskeleton (ortholog); plasma membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Orthologs:
Homo sapiens (human) : CDC42EP3 (CDC42 effector protein 3)  HGNC  Alliance
Mus musculus (house mouse) : Cdc42ep3 (CDC42 effector protein (Rho GTPase binding) 3)  MGI  Alliance
Rattus norvegicus (Norway rat) : Cdc42ep3 (CDC42 effector protein 3)  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Cdc42ep3 (CDC42 effector protein 3)
Pan paniscus (bonobo/pygmy chimpanzee) : CDC42EP3 (CDC42 effector protein 3)
Canis lupus familiaris (dog) : CDC42EP3 (CDC42 effector protein 3)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Cdc42ep3 (CDC42 effector protein 3)
Sus scrofa (pig) : CDC42EP3 (CDC42 effector protein 3)
Heterocephalus glaber (naked mole-rat) : Cdc42ep3 (CDC42 effector protein 3)
more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1 Ensembl1469,736,558 - 69,737,322 (+)Ensembl
ChlSab1.11469,709,470 - 69,738,305 (+)NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
CDC42EP3
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1 Ensembl1469,736,558 - 69,737,322 (+)Ensembl
ChlSab1.11469,709,470 - 69,738,305 (+)NCBI
CDC42EP3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl237,641,882 - 37,738,468 (-)EnsemblGRCh38hg38GRCh38
GRCh38237,641,944 - 37,672,949 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37237,869,025 - 37,899,678 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36237,724,247 - 37,752,830 (-)NCBINCBI36hg18NCBI36
Build 34237,782,393 - 37,810,977NCBI
Celera237,711,639 - 37,740,219 (-)NCBI
Cytogenetic Map2p22.2NCBI
HuRef237,608,843 - 37,639,483 (-)NCBIHuRef
CHM1_1237,798,478 - 37,829,103 (-)NCBICHM1_1
Cdc42ep3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391779,641,152 - 79,662,520 (-)NCBI
GRCm381779,333,723 - 79,355,091 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1779,333,727 - 79,355,091 (-)EnsemblGRCm38mm10GRCm38
MGSCv371779,733,365 - 79,754,431 (-)NCBIGRCm37mm9NCBIm37
MGSCv361779,239,083 - 79,260,138 (-)NCBImm8
Celera1783,643,319 - 83,664,470 (-)NCBICelera
Cytogenetic Map17E3NCBI
Cdc42ep3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.061,922,500 - 1,942,972 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl61,922,500 - 1,942,972 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.061,912,346 - 1,932,818 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.462,111,458 - 2,132,242 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.162,111,145 - 2,132,242 (-)NCBI
Celera615,376,813 - 15,397,267 (+)NCBICelera
Cytogenetic Map6q11NCBI
Cdc42ep3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554415,437,626 - 5,461,085 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554415,437,626 - 5,461,085 (-)NCBIChiLan1.0ChiLan1.0
CDC42EP3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12A38,429,213 - 38,460,283 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A38,433,075 - 38,433,839 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v02A37,665,482 - 37,696,817 (-)NCBIMhudiblu_PPA_v0panPan3
CDC42EP3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl1729,950,210 - 29,973,008 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.11729,949,452 - 29,973,008 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Cdc42ep3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_004936663676,869 - 701,416 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CDC42EP3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl3102,538,586 - 102,567,814 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.13102,537,662 - 102,567,669 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.23108,935,436 - 108,959,926 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Cdc42ep3
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473819,268,332 - 19,291,355 (-)NCBI


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium 18 10 38
Low 18 10 22
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSCSAT00000019547   ⟹   ENSCSAP00000018965
RefSeq Status:
Type: CODING
Position:
Vervet AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl1469,736,558 - 69,737,322 (+)Ensembl
RefSeq Acc Id: XM_007970929   ⟹   XP_007969120
RefSeq Status:
Type: CODING
Position:
Vervet AssemblyChrPosition (strand)Source
ChlSab1.11469,709,470 - 69,738,305 (+)NCBI
Sequence:
RefSeq Acc Id: XM_007970930   ⟹   XP_007969121
RefSeq Status:
Type: CODING
Position:
Vervet AssemblyChrPosition (strand)Source
ChlSab1.11469,709,470 - 69,738,305 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_007969120 (Get FASTA)   NCBI Sequence Viewer  
  XP_007969121 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_007969120   ⟸   XM_007970929
- UniProtKB: A0A0D9SDM6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_007969121   ⟸   XM_007970930
- UniProtKB: A0A0D9SDM6 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCSAP00000018965   ⟸   ENSCSAT00000019547


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000019457 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSCSAP00000018965 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000019547 ENTREZGENE, UniProtKB/TrEMBL
InterPro Cdc42_effect UniProtKB/TrEMBL
  CRIB_dom UniProtKB/TrEMBL
KEGG Report csab:103220474 UniProtKB/TrEMBL
NCBI Gene CDC42EP3 ENTREZGENE
Pfam BORG_CEP UniProtKB/TrEMBL
  PBD UniProtKB/TrEMBL
PROSITE CRIB UniProtKB/TrEMBL
SMART PBD UniProtKB/TrEMBL
UniProt A0A0D9SDM6 ENTREZGENE, UniProtKB/TrEMBL