ONECUT1 (one cut homeobox 1) - Rat Genome Database

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Gene: ONECUT1 (one cut homeobox 1) Chlorocebus sabaeus
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Symbol: ONECUT1
Name: one cut homeobox 1
RGD ID: 18713500
Description: ENCODES a protein that exhibits chromatin binding (ortholog); DNA binding (ortholog); DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); INVOLVED IN anatomical structure morphogenesis (ortholog); B cell differentiation (ortholog); cell fate commitment (ortholog); ASSOCIATED WITH Bloom syndrome (ortholog); colorectal cancer (ortholog); genetic disease (ortholog); FOUND IN nucleus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: hepatocyte nuclear factor 6
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12630,609,392 - 30,645,996 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666048110,585,853 - 110,622,490 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
nucleus  (ISO)

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
ONECUT1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12630,609,392 - 30,645,996 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666048110,585,853 - 110,622,490 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
ONECUT1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381552,755,053 - 52,790,336 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1552,755,053 - 52,791,078 (-)EnsemblGRCh38hg38GRCh38
GRCh371553,047,250 - 53,082,533 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361550,836,645 - 50,869,501 (-)NCBINCBI36Build 36hg18NCBI36
Build 341550,836,644 - 50,869,501NCBI
Celera1529,944,311 - 29,977,184 (-)NCBICelera
Cytogenetic Map15q21.3NCBI
HuRef1529,879,668 - 29,912,665 (-)NCBIHuRef
CHM1_11553,167,071 - 53,200,155 (-)NCBICHM1_1
T2T-CHM13v2.01550,563,333 - 50,598,640 (-)NCBIT2T-CHM13v2.0
Onecut1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39974,769,203 - 74,796,930 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl974,769,203 - 74,799,063 (+)EnsemblGRCm39 Ensembl
GRCm38974,861,921 - 74,889,648 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl974,861,921 - 74,891,781 (+)EnsemblGRCm38mm10GRCm38
MGSCv37974,709,728 - 74,737,455 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36974,648,524 - 74,676,252 (+)NCBIMGSCv36mm8
Celera972,045,890 - 72,046,250 (+)NCBICelera
Cytogenetic Map9DNCBI
cM Map941.93NCBI
Onecut1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8884,480,066 - 84,507,848 (+)NCBIGRCr8
mRatBN7.2875,599,432 - 75,633,598 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl875,599,740 - 75,627,277 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx881,106,361 - 81,133,976 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0879,357,324 - 79,384,922 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0877,205,677 - 77,233,284 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0881,765,779 - 81,799,894 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl881,766,041 - 81,793,577 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0881,384,757 - 81,418,580 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4879,644,305 - 79,672,772 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1879,663,358 - 79,691,814 (+)NCBI
Celera875,394,297 - 75,421,855 (+)NCBICelera
Cytogenetic Map8q24NCBI
Onecut1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554092,181,346 - 2,207,888 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554092,181,364 - 2,214,636 (+)NCBIChiLan1.0ChiLan1.0
ONECUT1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21641,982,502 - 42,023,294 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11546,162,843 - 46,203,617 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01531,694,830 - 31,727,644 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11550,017,606 - 50,053,058 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1550,016,010 - 50,053,062 (-)Ensemblpanpan1.1panPan2
ONECUT1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13018,384,533 - 18,425,940 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3018,387,130 - 18,425,497 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3018,312,652 - 18,353,439 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03018,533,528 - 18,574,309 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3018,535,494 - 18,574,636 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13018,451,424 - 18,492,204 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03018,570,831 - 18,609,718 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03018,674,572 - 18,715,403 (-)NCBIUU_Cfam_GSD_1.0
LOC101960907
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864096,722,333 - 96,733,257 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647114,532,892 - 14,566,904 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647114,532,888 - 14,581,258 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ONECUT1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1118,913,460 - 118,917,334 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11118,913,400 - 118,958,140 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21131,981,708 - 132,019,991 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Onecut1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247317,911,264 - 7,939,434 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247317,911,352 - 7,938,440 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: XM_008016553   ⟹   XP_008014744
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.12630,609,392 - 30,645,996 (+)NCBI
Vero_WHO_p1.0NW_023666048110,585,853 - 110,622,490 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_008014744 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_008014744   ⟸   XM_008016553


Additional Information

Database Acc Id Source(s)
NCBI Gene ONECUT1 ENTREZGENE