LY6G5B (lymphocyte antigen 6 family member G5B)

Gene: LY6G5B (lymphocyte antigen 6 family member G5B) Chlorocebus sabaeus

Analyze

Symbol:

LY6G5B

Name:

lymphocyte antigen 6 family member G5B

RGD ID:

18713371

Description:

ENCODES a protein that exhibits identical protein binding (ortholog); ASSOCIATED WITH genetic disease (ortholog); megacolon (ortholog); POIRIER-BIENVENU NEURODEVELOPMENTAL SYNDROME (ortholog); FOUND IN protein-containing complex (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

lymphocyte antigen 6 complex locus protein G5b; lymphocyte antigen 6 complex, locus G5B

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

ChlSab1.1 - Green Monkey 1.1 Assembly

Position:

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	17	40,352,182 - 40,354,423 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666044	31,581,236 - 31,583,603 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

megacolon (ISO)

POIRIER-BIENVENU NEURODEVELOPMENTAL SYNDROME (ISO)

proteasome-associated autoinflammatory syndrome 1 (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Cellular Component

external side of plasma membrane (IEA)

protein-containing complex (ISO)

Molecular Function

identical protein binding (ISO)

References

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

LY6G5B
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	17	40,352,182 - 40,354,423 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666044	31,581,236 - 31,583,603 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

LY6G5B
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	6	31,669,976 - 31,673,546 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	6	31,669,976 - 31,673,776 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	6	31,637,753 - 31,641,323 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	6	31,746,707 - 31,748,206 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	6	31,746,706 - 31,748,206	NCBI
Celera	6	33,236,949 - 33,238,448 (+)	NCBI		Celera
Cytogenetic Map	6	p21.33	NCBI
HuRef	6	31,424,953 - 31,426,452 (+)	NCBI		HuRef
CHM1_1	6	31,640,864 - 31,642,363 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	6	31,523,010 - 31,526,580 (+)	NCBI		T2T-CHM13v2.0

Ly6g5b
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	17	35,332,920 - 35,337,534 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	17	35,332,924 - 35,334,404 (-)	Ensembl		GRCm39 Ensembl
GRCm38	17	35,113,944 - 35,118,558 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	17	35,113,948 - 35,115,428 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	17	35,250,889 - 35,252,345 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	17	34,722,000 - 34,723,456 (-)	NCBI		MGSCv36	mm8
Celera	17	38,210,896 - 38,212,352 (-)	NCBI		Celera
Cytogenetic Map	17	B1	NCBI
cM Map	17	18.59	NCBI

Ly6g5b
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	20	3,710,132 - 3,712,193 (+)	NCBI		GRCr8
mRatBN7.2	20	3,705,464 - 3,707,830 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	20	3,706,124 - 3,707,133 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	20	4,405,081 - 4,406,018 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	20	3,767,139 - 3,768,076 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	20	4,305,027 - 4,305,963 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	20	5,106,248 - 5,108,604 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	20	5,106,890 - 5,107,899 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	20	7,180,182 - 7,181,118 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	20	3,769,818 - 3,770,754 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	20	3,770,044 - 3,770,981 (+)	NCBI
Celera	20	4,318,542 - 4,319,478 (-)	NCBI		Celera
Cytogenetic Map	20	p12	NCBI

Ly6g5b
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955437	216,686 - 219,694 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955437	215,824 - 218,262 (+)	NCBI	ChiLan1.0	ChiLan1.0

LY6G5B
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	5	46,147,258 - 46,154,872 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	6	42,108,761 - 42,112,102 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	6	31,331,352 - 31,333,749 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	6	32,221,221 - 32,223,561 (+)	NCBI	panpan1.1	PanPan1.1	panPan2

LY6G5B
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	12	1,154,568 - 1,156,973 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	12	1,155,288 - 1,156,336 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	12	1,291,374 - 1,293,151 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	12	1,300,167 - 1,301,944 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	12	1,295,454 - 1,301,941 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	12	1,158,611 - 1,161,269 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	12	1,226,771 - 1,228,548 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	12	1,293,851 - 1,295,628 (+)	NCBI		UU_Cfam_GSD_1.0

Ly6g5b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404946	35,703,898 - 35,706,368 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936727	1,854,991 - 1,856,948 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936727	1,854,742 - 1,857,014 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

Ly6g5b
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624754	24,531,301 - 24,532,284 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624754	24,530,723 - 24,532,937 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	endocrine system	hemolymphoid system	nervous system
High
Medium	36	13	60
Low		7
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_007973129	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC244030	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACDXN010000012	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

XM_007973129 ⟹ XP_007971320

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	17	40,352,182 - 40,354,423 (-)	NCBI
Vero_WHO_p1.0	NW_023666044	31,581,236 - 31,583,603 (+)	NCBI

Sequence:

show sequence

ACCAGGACAGATTTGTGCTCAGTGAATTGGGTGATGTTTTTAGTATAGAGCAGAACAGAATTCC
TAGGACTGTGTGTGATGAAGTGCAAGATCAAAAGGAAAAGACAGAAAAAGCATGTTTTAAAGAT
GAGAAGTATTTGGATACCTATGACTGTCTGTCTATACTGTAAGGTGCTTAATCAGCAACTCCAT
CTTTTAGTTTTAAAGGAAAAGTAGCCCTAAAGTCAGTATAACTAAGGGTGGAATGAGGTGGGAC
AAGGTCCAGAATTACTGCTCAGTGATGTGTGTGTGTGCTGCCTGCTGGTGGAGCTGGGACTGCC
CATCTCAGAAGGATGGGGATGCTTGATTTCCAGGCCAGGTTGTCCCAGCACAGTGGGGACTGGC
CCTGTTACATGAGGAAGACAGCACATGGCGGCAGAGATAGACACTAAGCCATGGACTTTCCAAG
GGAGGGAGGAGGTCTTTGGAGGGTATGCAGGACAAAGGTAGACACTGGATAAAGAACCAGATAG
TACCCCGTCTGGGCCATTGCTCCCACACTCAGAACCAGACGTTGTGGGTGAGGACATGCTGTCC
CTCCTGCCAAGTTAATAACTTCCTTCCCAACCGGATCCTTCCCCAAGCAGGAATATAGCTCTGC
ATTTACAGCAGCTCCTCAGACCTTGTCCACACCACCCTGCAGCTCAGGATTAAGGAGCGTGGCC
ACAGGAAGGTGGGGTTTCAGGGCATCCCTCAGGAACTGCCCGTCTCCCCAGAATTCCACAATGA
AGGCCCATATACTTGTAGGTGTGCTGGTCATGGTGGGCTTCACAGTGGGAAAGGTTCCTGTTCC
CGACATCCGGACCTGCCACTTCTGCCTCTTAGAAGACCCTTCTGTAGGATGCATTTCAGGCTCA
GAGAAGTGTACCATCAGCAGCTCATCCCCATGCATGGTGATCACCATCTATTATGATGCCAAGG
TTCGCTTCGTCATTCGAGGCTGTGGACAATACTATTCCTACCGCTGCCAAGAAAAACGCAACAC
CTACTTCGTAGAGTACTGGTATCAGGCCCAGTGCTGCCAGTACGATTATTGCAACTCCTGGTCA
AGCCCCCAACTCCAGAGCTTCCTGCCGGAGCCCCATGACAGGCCCCTGGCCCTGCCTCTGTCTG
ACTCCCAGATTCAATGGTTCTACCAGGCCCTGAACCTCTCACTACCCGTCCCCAGTTTCCATGC
TGGGAAGGAGCCTGATGGCCTGGACCCTGTGGTCACACTGCCCCTGAACCTGGGCTTGTCTTTT
GCTGAGCTGCGCCGCATGTATTTGTTCCTCAATAGTTCAGGACTTTTGCTTCTTCCCCAGCCTG
TACTCTGACACCTCACCCTTCCTGAATTCCACTCTGTGCAAGTATCTTTCTGTAACACCCTCAG
CATCCTGCACTGCCCTCTCTGAAAACACCCATATTCTTTGGTCACTGTGATTTCTTAGGCCTCC
CTCTGTTGTACCACTAGCATCTATATGACTTTGGTGTAATTTTCTCTCTCGAA

hide sequence

Protein Sequences


Protein RefSeqs	XP_007971320	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCSAP00000004855.1

RefSeq Acc Id:	XP_007971320 ⟸ XM_007973129
- UniProtKB:	A0A0D9R8B6 (UniProtKB/TrEMBL)

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCSAG00000008597	ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCSAT00000006655.1	UniProtKB/TrEMBL
InterPro	LY6G5B	UniProtKB/TrEMBL
	Snake_toxin-like_sf	UniProtKB/TrEMBL
NCBI Gene	LY6G5B	ENTREZGENE
PANTHER	LYMPHOCYTE ANTIGEN 6 COMPLEX LOCUS PROTEIN G5B	UniProtKB/TrEMBL
	PTHR14313	UniProtKB/TrEMBL
Superfamily-SCOP	SSF57302	UniProtKB/TrEMBL
UniProt	A0A0D9R8B6	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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