GPD1 (glycerol-3-phosphate dehydrogenase 1) - Rat Genome Database

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Gene: GPD1 (glycerol-3-phosphate dehydrogenase 1) Chlorocebus sabaeus
Analyze
Symbol: GPD1
Name: glycerol-3-phosphate dehydrogenase 1
RGD ID: 18711477
Description: ENCODES a protein that exhibits glycerol-3-phosphate dehydrogenase (quinone) activity (ortholog); glycerol-3-phosphate dehydrogenase [NAD(P)+] activity (ortholog); NAD binding (ortholog); INVOLVED IN cellular response to cAMP (ortholog); cellular response to tumor necrosis factor (ortholog); gluconeogenesis (ortholog); PARTICIPATES IN D-glycericacidemia pathway; electron transport chain pathway; familial lipoprotein lipase deficiency pathway; ASSOCIATED WITH Chemical and Drug Induced Liver Injury (ortholog); genetic disease (ortholog); Hypertriglyceridemia, Transient Infantile (ortholog); FOUND IN cytosol (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: glycerol-3-phosphate dehydrogenase [NAD(+)], cytoplasmic
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11146,329,479 - 46,339,227 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1146,331,569 - 46,337,439 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037199,781,124 - 199,788,621 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
GPD1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11146,329,479 - 46,339,227 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1146,331,569 - 46,337,439 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037199,781,124 - 199,788,621 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
GPD1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381250,104,008 - 50,111,313 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1250,103,982 - 50,111,313 (+)EnsemblGRCh38hg38GRCh38
GRCh371250,497,791 - 50,505,096 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361248,784,068 - 48,791,363 (+)NCBINCBI36Build 36hg18NCBI36
Build 341248,784,067 - 48,791,360NCBI
Celera1249,293,286 - 49,300,582 (+)NCBICelera
Cytogenetic Map12q13.12NCBI
HuRef1247,530,923 - 47,538,425 (+)NCBIHuRef
CHM1_11250,463,752 - 50,471,253 (+)NCBICHM1_1
T2T-CHM13v2.01250,067,090 - 50,074,395 (+)NCBIT2T-CHM13v2.0
Gpd1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391599,615,468 - 99,622,895 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1599,615,396 - 99,622,886 (+)EnsemblGRCm39 Ensembl
GRCm381599,717,587 - 99,725,014 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1599,717,515 - 99,725,005 (+)EnsemblGRCm38mm10GRCm38
MGSCv371599,548,024 - 99,555,439 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361599,545,627 - 99,553,042 (+)NCBIMGSCv36mm8
Celera15101,873,405 - 101,880,780 (+)NCBICelera
Cytogenetic Map15F1NCBI
cM Map1556.13NCBI
Gpd1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87132,722,982 - 132,730,373 (+)NCBIGRCr8
mRatBN7.27130,842,526 - 130,851,530 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7130,844,138 - 130,851,529 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx7132,647,629 - 132,655,240 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07134,873,210 - 134,880,821 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07134,785,735 - 134,793,346 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.07141,368,928 - 141,377,931 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7141,370,491 - 141,377,928 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X115,874,138 - 115,882,579 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47138,458,875 - 138,466,266 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.17138,535,311 - 138,542,700 (+)NCBI
Celera7127,325,535 - 127,332,926 (+)NCBICelera
Cytogenetic Map7q36NCBI
Gpd1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955547676,342 - 690,777 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955547676,661 - 683,906 (+)NCBIChiLan1.0ChiLan1.0
GPD1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21044,068,910 - 44,085,459 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11244,065,672 - 44,082,276 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01238,644,466 - 38,651,924 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11239,541,544 - 39,549,040 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1239,541,550 - 39,549,040 (-)Ensemblpanpan1.1panPan2
GPD1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1274,614,878 - 4,622,013 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl274,614,864 - 4,621,922 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2741,636,151 - 41,643,304 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0274,663,998 - 4,671,137 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl274,664,000 - 4,671,090 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1274,628,876 - 4,636,009 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0274,619,676 - 4,625,555 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02742,031,192 - 42,038,340 (+)NCBIUU_Cfam_GSD_1.0
Gpd1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494565,394,517 - 65,402,211 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365127,762,643 - 7,770,309 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365127,762,325 - 7,770,007 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GPD1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl516,007,448 - 16,017,825 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1516,008,179 - 16,021,676 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2516,330,841 - 16,334,498 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Gpd1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248162,203,731 - 2,210,509 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248162,203,731 - 2,211,006 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in GPD1
198 total Variants

Expression

RNA-SEQ Expression

ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
reproductive system
76 36 20 36 36 60 20

Sequence


Ensembl Acc Id: ENSCSAT00000004024   ⟹   ENSCSAP00000002285
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl1146,331,569 - 46,337,439 (+)Ensembl
RefSeq Acc Id: XM_008003208   ⟹   XP_008001399
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11146,329,482 - 46,339,227 (+)NCBI
Vero_WHO_p1.0NW_023666037199,781,124 - 199,788,621 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_008001399 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000002285
  ENSCSAP00000002285.1
RefSeq Acc Id: XP_008001399   ⟸   XM_008003208
- UniProtKB: A0A0D9R0Z6 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCSAP00000002285   ⟸   ENSCSAT00000004024


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000005984 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000004024.1 UniProtKB/TrEMBL
Gene3D-CATH N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase, domain 2 UniProtKB/TrEMBL
  NAD(P)-binding Rossmann-like Domain UniProtKB/TrEMBL
InterPro 6-PGluconate_DH-like_C_sf UniProtKB/TrEMBL
  6PGD_dom2 UniProtKB/TrEMBL
  G3P_DH_NAD-dep UniProtKB/TrEMBL
  G3P_DH_NAD-dep_C UniProtKB/TrEMBL
  G3P_DH_NAD-dep_euk UniProtKB/TrEMBL
  G3P_DH_NAD-dep_N UniProtKB/TrEMBL
  NAD(P)-bd_dom_sf UniProtKB/TrEMBL
KEGG Report csab:103238296 UniProtKB/TrEMBL
NCBI Gene GPD1 ENTREZGENE
PANTHER GLYCEROL-3-PHOSPHATE DEHYDROGENASE UniProtKB/TrEMBL
  GLYCEROL-3-PHOSPHATE DEHYDROGENASE [NAD(+)], CYTOPLASMIC UniProtKB/TrEMBL
Pfam NAD_Gly3P_dh_C UniProtKB/TrEMBL
  NAD_Gly3P_dh_N UniProtKB/TrEMBL
PIRSF Glycerol-3-P_dh UniProtKB/TrEMBL
PRINTS GPDHDRGNASE UniProtKB/TrEMBL
PROSITE NAD_G3PDH UniProtKB/TrEMBL
Superfamily-SCOP SSF48179 UniProtKB/TrEMBL
  SSF51735 UniProtKB/TrEMBL
UniProt A0A0D9R0Z6 ENTREZGENE, UniProtKB/TrEMBL