ITPRID2 (ITPR interacting domain containing 2) - Rat Genome Database

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Gene: ITPRID2 (ITPR interacting domain containing 2) Chlorocebus sabaeus
Analyze
Symbol: ITPRID2
Name: ITPR interacting domain containing 2
RGD ID: 18708042
Description: ENCODES a protein that exhibits actin filament binding (ortholog); ASSOCIATED WITH genetic disease (ortholog); retinitis pigmentosa (ortholog); FOUND IN cytosol (ortholog); nucleoplasm (ortholog); plasma membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: sperm specific antigen 2; sperm-specific antigen 2; SSFA2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11067,430,024 - 67,468,865 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1067,430,169 - 67,468,863 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666040132,106,347 - 132,145,190 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
ITPRID2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11067,430,024 - 67,468,865 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1067,430,169 - 67,468,863 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666040132,106,347 - 132,145,190 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
ITPRID2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382181,891,730 - 181,930,738 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2181,891,730 - 181,930,738 (+)EnsemblGRCh38hg38GRCh38
GRCh372182,756,457 - 182,795,465 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362182,464,927 - 182,503,706 (+)NCBINCBI36Build 36hg18NCBI36
Build 342182,582,187 - 182,620,967NCBI
Celera2176,352,205 - 176,391,198 (+)NCBICelera
Cytogenetic Map2q31.3NCBI
HuRef2174,612,696 - 174,651,501 (+)NCBIHuRef
CHM1_12182,762,334 - 182,801,336 (+)NCBICHM1_1
T2T-CHM13v2.02182,381,516 - 182,420,528 (+)NCBIT2T-CHM13v2.0
Itprid2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39279,419,207 - 79,503,310 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl279,465,696 - 79,503,310 (+)EnsemblGRCm39 Ensembl
GRCm38279,588,863 - 79,672,966 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl279,635,352 - 79,672,966 (+)EnsemblGRCm38mm10GRCm38
MGSCv37279,475,582 - 79,513,123 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36279,436,379 - 79,471,673 (+)NCBIMGSCv36mm8
Celera281,294,736 - 81,332,308 (+)NCBICelera
Cytogenetic Map2C3NCBI
cM Map247.58NCBI
Itprid2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8384,943,572 - 84,980,993 (+)NCBIGRCr8
mRatBN7.2364,536,707 - 64,573,978 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl364,536,707 - 64,573,978 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx367,894,560 - 67,931,766 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0376,478,148 - 76,515,356 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0374,224,646 - 74,261,896 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0366,593,767 - 66,631,143 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl366,593,934 - 66,631,723 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0373,152,918 - 73,190,286 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4362,438,270 - 62,475,545 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1362,307,163 - 62,369,893 (+)NCBI
Celera363,996,187 - 64,033,482 (+)NCBICelera
Cytogenetic Map3q24NCBI
Itprid2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540315,386,114 - 15,415,019 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540315,386,116 - 15,421,284 (-)NCBIChiLan1.0ChiLan1.0
ITPRID2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21384,540,533 - 84,579,263 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B84,555,509 - 84,594,236 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B69,154,230 - 69,192,954 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B186,964,020 - 187,002,334 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B186,963,457 - 187,002,334 (+)Ensemblpanpan1.1panPan2
ITPRID2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13624,966,933 - 25,077,502 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3625,039,346 - 25,076,515 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3624,925,034 - 25,035,720 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03625,127,179 - 25,238,259 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3625,199,524 - 25,238,255 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13625,218,569 - 25,329,363 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03625,183,724 - 25,294,812 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03625,319,831 - 25,430,955 (+)NCBIUU_Cfam_GSD_1.0
Itprid2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303142,046,075 - 142,091,328 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493650910,606,443 - 10,645,230 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493650910,606,449 - 10,645,231 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ITPRID2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1587,326,442 - 87,418,089 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11587,326,417 - 87,418,092 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21596,892,259 - 96,945,330 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Itprid2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248443,682,098 - 3,719,203 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248443,682,073 - 3,719,080 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium 36 7 60
Low 13
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSCSAT00000010891   ⟹   ENSCSAP00000008976
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl1067,430,169 - 67,468,863 (+)Ensembl
RefSeq Acc Id: XM_007965538   ⟹   XP_007963729
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11067,430,024 - 67,468,865 (+)NCBI
Vero_WHO_p1.0NW_023666040132,106,347 - 132,145,190 (-)NCBI
Sequence:
RefSeq Acc Id: XM_007965539   ⟹   XP_007963730
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11067,430,271 - 67,468,865 (+)NCBI
Vero_WHO_p1.0NW_023666040132,106,632 - 132,145,190 (-)NCBI
Sequence:
RefSeq Acc Id: XM_007965540   ⟹   XP_007963731
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11067,430,024 - 67,468,865 (+)NCBI
Vero_WHO_p1.0NW_023666040132,106,347 - 132,145,181 (-)NCBI
Sequence:
RefSeq Acc Id: XM_007965541   ⟹   XP_007963732
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11067,430,024 - 67,468,865 (+)NCBI
Vero_WHO_p1.0NW_023666040132,106,347 - 132,145,190 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_007963729 (Get FASTA)   NCBI Sequence Viewer  
  XP_007963730 (Get FASTA)   NCBI Sequence Viewer  
  XP_007963731 (Get FASTA)   NCBI Sequence Viewer  
  XP_007963732 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000008976.1
Reference Protein Sequences
RefSeq Acc Id: XP_007963729   ⟸   XM_007965538
- Peptide Label: isoform X1
- UniProtKB: A0A0D9RK37 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_007963732   ⟸   XM_007965541
- Peptide Label: isoform X4
- UniProtKB: A0A0D9RK37 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_007963731   ⟸   XM_007965540
- Peptide Label: isoform X3
- UniProtKB: A0A0D9RK37 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_007963730   ⟸   XM_007965539
- Peptide Label: isoform X2
- UniProtKB: A0A0D9RK37 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCSAP00000008976   ⟸   ENSCSAT00000010891


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000012799 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000010891.1 UniProtKB/TrEMBL
InterPro ITPR-bd UniProtKB/TrEMBL
  SSFA2_C UniProtKB/TrEMBL
  TESPA1-like UniProtKB/TrEMBL
KEGG Report csab:103217454 UniProtKB/TrEMBL
NCBI Gene ITPRID2 ENTREZGENE
PANTHER PTHR17469 UniProtKB/TrEMBL
  PTHR17469:SF11 UniProtKB/TrEMBL
Pfam KRAP_IP3R_bind UniProtKB/TrEMBL
  SSFA2_C UniProtKB/TrEMBL
SMART KRAP_IP3R_bind UniProtKB/TrEMBL
UniProt A0A0D9RK37 ENTREZGENE, UniProtKB/TrEMBL