CCDC120 (coiled-coil domain containing 120) - Rat Genome Database

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Gene: CCDC120 (coiled-coil domain containing 120) Chlorocebus sabaeus
Analyze
Symbol: CCDC120
Name: coiled-coil domain containing 120
RGD ID: 18705514
Description: INVOLVED IN microtubule anchoring at centrosome (inferred); protein localization (inferred); ASSOCIATED WITH autistic disorder (ortholog); congenital disorder of glycosylation type IIm (ortholog); Dwarfism (ortholog); FOUND IN centriolar subdistal appendage (inferred); centriole (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: coiled-coil domain-containing protein 120
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X46,161,238 - 46,178,128 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 EnsemblX46,170,651 - 46,177,244 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607611,680,553 - 11,744,011 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
CCDC120
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X46,161,238 - 46,178,128 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 EnsemblX46,170,651 - 46,177,244 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607611,680,553 - 11,744,011 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
CCDC120
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X49,053,572 - 49,069,858 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX49,053,572 - 49,069,857 (+)EnsemblGRCh38hg38GRCh38
GRCh37X48,911,101 - 48,927,510 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36X48,803,460 - 48,814,454 (+)NCBINCBI36Build 36hg18NCBI36
CeleraX52,736,981 - 52,747,975 (-)NCBICelera
Cytogenetic MapXp11.23NCBI
HuRefX46,568,375 - 46,584,146 (+)NCBIHuRef
CHM1_1X48,942,292 - 48,958,832 (+)NCBICHM1_1
T2T-CHM13v2.0X48,465,178 - 48,481,578 (+)NCBIT2T-CHM13v2.0
Ccdc120
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X7,597,953 - 7,607,563 (-)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX7,597,953 - 7,617,144 (-)EnsemblGRCm39 Ensembl
GRCm38X7,731,714 - 7,741,324 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX7,731,714 - 7,750,905 (-)EnsemblGRCm38mm10GRCm38
MGSCv37X7,308,840 - 7,318,450 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X6,888,673 - 6,898,283 (-)NCBIMGSCv36mm8
CeleraX3,729,252 - 3,738,844 (+)NCBICelera
Cytogenetic MapXA1.1NCBI
cM MapX3.48NCBI
Ccdc120
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X17,437,219 - 17,443,716 (+)NCBIGRCr8
mRatBN7.2X14,753,594 - 14,772,745 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX14,753,696 - 14,772,743 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_UtxX19,579,312 - 19,585,814 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X20,497,302 - 20,503,804 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X16,762,469 - 16,768,971 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X15,610,230 - 15,616,727 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX15,598,652 - 15,617,665 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X16,391,452 - 16,397,949 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X26,804,333 - 26,810,830 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
CeleraX14,849,524 - 14,855,989 (+)NCBICelera
Cytogenetic MapXq12NCBI
Ccdc120
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955543587,321 - 592,544 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955543577,078 - 594,076 (+)NCBIChiLan1.0ChiLan1.0
CCDC120
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X50,543,395 - 50,559,846 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X50,546,797 - 50,563,225 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X41,341,834 - 41,367,761 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X49,207,391 - 49,223,622 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX49,207,391 - 49,223,552 (+)Ensemblpanpan1.1panPan2
CCDC120
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X42,206,553 - 42,217,607 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX42,210,804 - 42,216,993 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX16,577,484 - 16,593,254 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0X42,338,079 - 42,353,858 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 EnsemblX42,338,081 - 42,353,858 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1X42,324,422 - 42,340,191 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X42,312,074 - 42,327,841 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X42,406,817 - 42,422,586 (+)NCBIUU_Cfam_GSD_1.0
Ccdc120
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X34,713,749 - 34,731,113 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936721964,603 - 969,992 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936721954,188 - 971,507 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CCDC120
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX43,134,275 - 43,146,775 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X43,128,938 - 43,146,777 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X47,976,893 - 47,994,717 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Ccdc120
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624893831,833 - 841,884 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624893824,834 - 841,786 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium 9 9
Low 27 15 51
Below cutoff 5

Sequence


Reference Sequences
RefSeq Acc Id: ENSCSAT00000011075   ⟹   ENSCSAP00000009159
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 EnsemblX46,170,651 - 46,177,244 (+)Ensembl
RefSeq Acc Id: XM_007991664   ⟹   XP_007989855
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1X46,161,244 - 46,177,248 (+)NCBI
Vero_WHO_p1.0NW_02366607611,680,553 - 11,744,011 (+)NCBI
Sequence:
RefSeq Acc Id: XM_007991665   ⟹   XP_007989856
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1X46,167,566 - 46,177,248 (+)NCBI
Vero_WHO_p1.0NW_02366607611,685,036 - 11,744,011 (+)NCBI
Sequence:
RefSeq Acc Id: XM_007991666   ⟹   XP_007989857
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1X46,161,243 - 46,177,248 (+)NCBI
Vero_WHO_p1.0NW_02366607611,680,553 - 11,744,011 (+)NCBI
Sequence:
RefSeq Acc Id: XM_007991667   ⟹   XP_007989858
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1X46,161,244 - 46,177,248 (+)NCBI
Vero_WHO_p1.0NW_02366607611,680,553 - 11,744,011 (+)NCBI
Sequence:
RefSeq Acc Id: XM_007991668   ⟹   XP_007989859
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1X46,167,566 - 46,177,248 (+)NCBI
Vero_WHO_p1.0NW_02366607611,685,036 - 11,744,011 (+)NCBI
Sequence:
RefSeq Acc Id: XM_007991669   ⟹   XP_007989860
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1X46,161,243 - 46,177,248 (+)NCBI
Vero_WHO_p1.0NW_02366607611,680,582 - 11,744,011 (+)NCBI
Sequence:
RefSeq Acc Id: XM_007991670   ⟹   XP_007989861
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1X46,161,238 - 46,178,128 (+)NCBI
Vero_WHO_p1.0NW_02366607611,680,553 - 11,744,011 (+)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_007989861   ⟸   XM_007991670
- Peptide Label: isoform X2
- UniProtKB: A0A0D9RKM0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_007989857   ⟸   XM_007991666
- Peptide Label: isoform X1
RefSeq Acc Id: XP_007989860   ⟸   XM_007991669
- Peptide Label: isoform X1
RefSeq Acc Id: XP_007989855   ⟸   XM_007991664
- Peptide Label: isoform X1
RefSeq Acc Id: XP_007989858   ⟸   XM_007991667
- Peptide Label: isoform X1
RefSeq Acc Id: XP_007989856   ⟸   XM_007991665
- Peptide Label: isoform X1
RefSeq Acc Id: XP_007989859   ⟸   XM_007991668
- Peptide Label: isoform X1
RefSeq Acc Id: ENSCSAP00000009159   ⟸   ENSCSAT00000011075


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000013004 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000011075.1 UniProtKB/TrEMBL
InterPro CCDC120/INAVA UniProtKB/TrEMBL
  DUF3338 UniProtKB/TrEMBL
NCBI Gene CCDC120 ENTREZGENE
PANTHER PTHR16093 UniProtKB/TrEMBL
  PTHR16093:SF5 UniProtKB/TrEMBL
Pfam DUF3338 UniProtKB/TrEMBL
UniProt A0A0D9RKM0 ENTREZGENE, UniProtKB/TrEMBL