TSGA10 (testis specific 10) - Rat Genome Database

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Gene: TSGA10 (testis specific 10) Chlorocebus sabaeus
Analyze
Symbol: TSGA10
Name: testis specific 10
RGD ID: 18697004
Description: ENCODES a protein that exhibits structural molecule activity (ortholog); INVOLVED IN cell projection assembly (ortholog); ASSOCIATED WITH genetic disease (ortholog); spermatogenic failure 26 (ortholog); FOUND IN motile cilium (ortholog); neuron projection (ortholog); sperm fibrous sheath (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: testis-specific gene 10 protein
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1142,714,017 - 2,865,111 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl142,713,812 - 2,864,734 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666041170,306,269 - 170,458,056 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
TSGA10
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1142,714,017 - 2,865,111 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl142,713,812 - 2,864,734 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666041170,306,269 - 170,458,056 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
TSGA10
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38298,997,261 - 99,154,966 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl298,997,261 - 99,154,964 (-)EnsemblGRCh38hg38GRCh38
GRCh37299,613,724 - 99,771,429 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36298,980,781 - 99,124,469 (-)NCBINCBI36Build 36hg18NCBI36
Build 34299,072,872 - 99,216,553NCBI
Celera293,818,739 - 93,975,875 (-)NCBICelera
Cytogenetic Map2q11.2NCBI
HuRef293,379,409 - 93,536,983 (-)NCBIHuRef
CHM1_1299,618,402 - 99,776,138 (-)NCBICHM1_1
T2T-CHM13v2.0299,455,791 - 99,613,837 (-)NCBIT2T-CHM13v2.0
Tsga10
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39137,793,651 - 37,905,507 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl137,793,857 - 37,905,510 (-)EnsemblGRCm39 Ensembl
GRCm38137,754,570 - 37,866,426 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl137,754,776 - 37,866,429 (-)EnsemblGRCm38mm10GRCm38
MGSCv37137,811,621 - 37,921,924 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36137,699,322 - 37,809,625 (-)NCBIMGSCv36mm8
Celera137,536,271 - 37,645,900 (-)NCBICelera
Cytogenetic Map1BNCBI
cM Map115.88NCBI
Tsga10
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8947,487,007 - 47,594,201 (-)NCBIGRCr8
mRatBN7.2939,991,203 - 40,098,259 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl939,991,830 - 40,098,232 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx948,487,241 - 48,594,133 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0953,609,997 - 53,716,887 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0951,891,904 - 51,998,962 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0944,351,655 - 44,456,576 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl944,351,951 - 44,456,554 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0944,050,725 - 44,154,714 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4936,713,297 - 36,811,661 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1936,714,710 - 36,813,066 (-)NCBI
Celera937,745,749 - 37,852,493 (-)NCBICelera
Cytogenetic Map9q21NCBI
Tsga10
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554705,376,749 - 5,471,815 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554705,376,749 - 5,471,904 (-)NCBIChiLan1.0ChiLan1.0
TSGA10
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21229,291,075 - 29,442,689 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A29,293,835 - 29,445,449 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A100,144,683 - 100,308,584 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A99,920,575 - 100,083,682 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A99,920,575 - 100,083,654 (-)Ensemblpanpan1.1panPan2
TSGA10
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11043,556,248 - 43,685,221 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1043,556,346 - 43,725,260 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1043,479,781 - 43,652,756 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01044,428,420 - 44,563,676 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1044,428,510 - 44,597,625 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11044,138,446 - 44,271,894 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01044,422,006 - 44,594,703 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01044,606,433 - 44,741,615 (+)NCBIUU_Cfam_GSD_1.0
Tsga10
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629284,759,049 - 84,910,550 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049367442,044,388 - 2,100,353 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TSGA10
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl355,198,218 - 55,321,236 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1355,197,709 - 55,319,628 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2357,781,692 - 57,871,837 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Tsga10
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247494,022,631 - 4,108,141 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247494,023,629 - 4,142,496 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium 5 21
Low 31 18 39
Below cutoff 2

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_008008128 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008008129 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008008130 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008008131 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008008134 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008008135 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008008136 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008008137 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008008138 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008008139 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008008140 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008008141 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008008142 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008008143 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008008145 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008008146 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008008147 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008008148 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008008149 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038004187 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038004188 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038004189 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038004190 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038004191 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038004192 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038004193 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038004194 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JACDXN010000009 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSCSAT00000015319   ⟹   ENSCSAP00000013263
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl142,713,812 - 2,864,734 (-)Ensembl
RefSeq Acc Id: XM_008008128   ⟹   XP_008006319
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1142,714,017 - 2,864,845 (-)NCBI
Vero_WHO_p1.0NW_023666041170,306,882 - 170,457,576 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008008129   ⟹   XP_008006320
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1142,714,017 - 2,864,613 (-)NCBI
Vero_WHO_p1.0NW_023666041170,306,269 - 170,457,558 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008008131   ⟹   XP_008006322
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1142,714,017 - 2,864,845 (-)NCBI
Vero_WHO_p1.0NW_023666041170,306,269 - 170,457,558 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008008138   ⟹   XP_008006329
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1142,714,017 - 2,864,958 (-)NCBI
Vero_WHO_p1.0NW_023666041170,306,882 - 170,457,768 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008008140   ⟹   XP_008006331
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1142,714,017 - 2,864,965 (-)NCBI
Vero_WHO_p1.0NW_023666041170,306,269 - 170,457,917 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008008142   ⟹   XP_008006333
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1142,714,017 - 2,850,824 (-)NCBI
Vero_WHO_p1.0NW_023666041170,306,269 - 170,457,782 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008008143   ⟹   XP_008006334
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1142,714,017 - 2,864,958 (-)NCBI
Vero_WHO_p1.0NW_023666041170,306,882 - 170,457,776 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008008145   ⟹   XP_008006336
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1142,714,017 - 2,865,111 (-)NCBI
Vero_WHO_p1.0NW_023666041170,306,882 - 170,458,056 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008008146   ⟹   XP_008006337
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1142,714,017 - 2,864,686 (-)NCBI
Vero_WHO_p1.0NW_023666041170,306,269 - 170,457,502 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008008147   ⟹   XP_008006338
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1142,714,017 - 2,833,404 (-)NCBI
Vero_WHO_p1.0NW_023666041170,306,269 - 170,457,774 (-)NCBI
Sequence:
RefSeq Acc Id: XM_038004187   ⟹   XP_037860115
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_023666041170,306,269 - 170,457,554 (-)NCBI
RefSeq Acc Id: XM_038004188   ⟹   XP_037860116
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_023666041170,306,269 - 170,457,558 (-)NCBI
RefSeq Acc Id: XM_038004189   ⟹   XP_037860117
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_023666041170,306,269 - 170,457,782 (-)NCBI
RefSeq Acc Id: XM_038004190   ⟹   XP_037860118
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_023666041170,306,882 - 170,457,927 (-)NCBI
RefSeq Acc Id: XM_038004191   ⟹   XP_037860119
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_023666041170,306,269 - 170,457,927 (-)NCBI
RefSeq Acc Id: XM_038004192   ⟹   XP_037860120
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_023666041170,306,269 - 170,457,777 (-)NCBI
RefSeq Acc Id: XM_038004193   ⟹   XP_037860121
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_023666041170,306,269 - 170,433,919 (-)NCBI
RefSeq Acc Id: XM_038004194   ⟹   XP_037860122
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_023666041170,306,269 - 170,433,771 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_008006336   ⟸   XM_008008145
- Peptide Label: isoform X6
RefSeq Acc Id: XP_008006331   ⟸   XM_008008140
- Peptide Label: isoform X6
RefSeq Acc Id: XP_008006334   ⟸   XM_008008143
- Peptide Label: isoform X6
RefSeq Acc Id: XP_008006329   ⟸   XM_008008138
- Peptide Label: isoform X6
RefSeq Acc Id: XP_008006322   ⟸   XM_008008131
- Peptide Label: isoform X3
RefSeq Acc Id: XP_008006319   ⟸   XM_008008128
- Peptide Label: isoform X2
- UniProtKB: A0A0D9RXC4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_008006337   ⟸   XM_008008146
- Peptide Label: isoform X6
RefSeq Acc Id: XP_008006320   ⟸   XM_008008129
- Peptide Label: isoform X1
RefSeq Acc Id: XP_008006333   ⟸   XM_008008142
- Peptide Label: isoform X6
RefSeq Acc Id: XP_008006338   ⟸   XM_008008147
- Peptide Label: isoform X6
RefSeq Acc Id: ENSCSAP00000013263   ⟸   ENSCSAT00000015319
RefSeq Acc Id: XP_037860119   ⟸   XM_038004191
- Peptide Label: isoform X6
RefSeq Acc Id: XP_037860117   ⟸   XM_038004189
- Peptide Label: isoform X6
RefSeq Acc Id: XP_037860120   ⟸   XM_038004192
- Peptide Label: isoform X6
RefSeq Acc Id: XP_037860116   ⟸   XM_038004188
- Peptide Label: isoform X5
RefSeq Acc Id: XP_037860115   ⟸   XM_038004187
- Peptide Label: isoform X4
RefSeq Acc Id: XP_037860121   ⟸   XM_038004193
- Peptide Label: isoform X6
RefSeq Acc Id: XP_037860122   ⟸   XM_038004194
- Peptide Label: isoform X6
RefSeq Acc Id: XP_037860118   ⟸   XM_038004190
- Peptide Label: isoform X6


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000017227 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000015319.1 UniProtKB/TrEMBL
KEGG Report csab:103241105 UniProtKB/TrEMBL
NCBI Gene TSGA10 ENTREZGENE
PANTHER CENTROSOMAL PROTEIN CEP135 UniProtKB/TrEMBL
  TESTIS SPECIFIC 10 UniProtKB/TrEMBL
Superfamily-SCOP Tropomyosin UniProtKB/TrEMBL
UniProt A0A0D9RXC4 ENTREZGENE, UniProtKB/TrEMBL