GYPC (glycophorin C (Gerbich blood group)) - Rat Genome Database

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Gene: GYPC (glycophorin C (Gerbich blood group)) Chlorocebus sabaeus
Analyze
Symbol: GYPC
Name: glycophorin C (Gerbich blood group)
RGD ID: 18696540
Description: ASSOCIATED WITH atrial fibrillation (ortholog); genetic disease (ortholog); malaria (ortholog); FOUND IN cortical cytoskeleton (ortholog); membrane (ortholog); plasma membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: glycophorin-C
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1103,532,143 - 3,572,772 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366606119,189,314 - 19,195,299 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
GYPC
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1103,532,143 - 3,572,772 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366606119,189,314 - 19,195,299 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
GYPC
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382126,656,158 - 126,696,667 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2126,656,133 - 126,696,667 (+)EnsemblGRCh38hg38GRCh38
GRCh372127,413,734 - 127,454,243 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362127,130,154 - 127,170,716 (+)NCBINCBI36Build 36hg18NCBI36
Build 342127,129,913 - 127,170,475NCBI
Celera2120,729,367 - 120,768,843 (+)NCBICelera
Cytogenetic Map2q14.3NCBI
HuRef2119,723,380 - 119,764,110 (+)NCBIHuRef
CHM1_12127,417,705 - 127,458,438 (+)NCBICHM1_1
T2T-CHM13v2.02127,093,225 - 127,133,709 (+)NCBIT2T-CHM13v2.0
Gypc
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391832,661,373 - 32,693,087 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1832,661,375 - 32,693,087 (-)EnsemblGRCm39 Ensembl
GRCm381832,528,320 - 32,560,034 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1832,528,322 - 32,560,034 (-)EnsemblGRCm38mm10GRCm38
MGSCv371832,687,974 - 32,719,688 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361832,671,330 - 32,702,984 (-)NCBIMGSCv36mm8
Celera1833,010,760 - 33,042,491 (-)NCBICelera
Cytogenetic Map18B1NCBI
cM Map1818.05NCBI
Gypc
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81824,434,921 - 24,467,592 (-)NCBIGRCr8
mRatBN7.21824,160,738 - 24,193,408 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1824,160,739 - 24,193,204 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1824,288,782 - 24,321,453 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01825,045,450 - 25,084,640 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01824,383,808 - 24,416,480 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01825,312,386 - 25,344,614 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1825,312,387 - 25,344,614 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01825,028,311 - 25,060,325 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41824,974,608 - 25,006,999 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11825,001,254 - 25,033,645 (-)NCBI
Celera1823,910,487 - 23,942,899 (-)NCBICelera
Cytogenetic Map18p12NCBI
Gypc
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554593,748,272 - 3,754,402 (-)NCBIChiLan1.0ChiLan1.0
GYPC
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21348,947,040 - 48,989,879 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B48,962,018 - 49,003,081 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B33,578,851 - 33,619,869 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B127,326,274 - 127,367,494 (+)NCBIpanpan1.1PanPan1.1panPan2
GYPC
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11923,946,413 - 23,988,970 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1923,946,494 - 23,988,415 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1924,186,247 - 24,228,395 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01925,279,568 - 25,321,780 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1925,279,568 - 25,321,782 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11923,976,284 - 24,018,407 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01924,180,218 - 24,222,344 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01925,296,044 - 25,338,166 (-)NCBIUU_Cfam_GSD_1.0
Gypc
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530397,056,110 - 97,091,041 (+)NCBIHiC_Itri_2
SpeTri2.0NW_00493646944,526,679 - 44,561,549 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GYPC
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1525,576,567 - 25,579,306 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11525,576,343 - 25,606,913 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21529,594,980 - 29,625,473 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Gypc
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473217,880,165 - 17,913,317 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_037988158   ⟹   XP_037844086
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366606119,189,314 - 19,195,299 (+)NCBI
Protein Sequences
Protein RefSeqs XP_037844086 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_037844086   ⟸   XM_037988158


Additional Information

Database Acc Id Source(s)
NCBI Gene GYPC ENTREZGENE