CENPO (centromere protein O) - Rat Genome Database

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Gene: CENPO (centromere protein O) Chlorocebus sabaeus
Analyze
Symbol: CENPO
Name: centromere protein O
RGD ID: 18691855
Description: INVOLVED IN centromere complex assembly (inferred); ASSOCIATED WITH genetic disease (ortholog); obesity (ortholog); Tatton-Brown-Rahman syndrome (ortholog); FOUND IN inner kinetochore (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11482,857,947 - 82,875,904 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1482,854,314 - 82,876,618 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604529,292,529 - 29,312,833 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
CENPO
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11482,857,947 - 82,875,904 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1482,854,314 - 82,876,618 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604529,292,529 - 29,312,833 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
CENPO
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38224,793,425 - 24,822,376 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl224,793,136 - 24,822,376 (+)EnsemblGRCh38hg38GRCh38
GRCh37225,016,294 - 25,045,245 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36224,869,841 - 24,896,288 (+)NCBINCBI36Build 36hg18NCBI36
Celera224,856,666 - 24,883,102 (+)NCBICelera
Cytogenetic Map2p23.3NCBI
HuRef224,754,046 - 24,783,071 (+)NCBIHuRef
CHM1_1224,945,754 - 24,974,776 (+)NCBICHM1_1
T2T-CHM13v2.0224,828,225 - 24,857,125 (+)NCBIT2T-CHM13v2.0
Cenpo
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39124,243,548 - 4,284,255 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl124,246,004 - 4,284,294 (-)EnsemblGRCm39 Ensembl
GRCm38124,195,398 - 4,234,255 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl124,196,004 - 4,234,294 (-)EnsemblGRCm38mm10GRCm38
MGSCv37124,211,672 - 4,234,294 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36124,212,890 - 4,241,926 (-)NCBIMGSCv36mm8
Celera124,138,803 - 4,166,794 (-)NCBICelera
Cytogenetic Map12A1.1NCBI
cM Map122.02NCBI
Cenpo
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8632,923,127 - 32,937,879 (-)NCBIGRCr8
mRatBN7.2627,203,642 - 27,218,394 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl627,188,537 - 27,218,314 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx627,495,904 - 27,510,628 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0627,811,793 - 27,826,517 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0627,289,327 - 27,304,074 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0628,648,804 - 28,663,527 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl628,649,638 - 28,663,233 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0638,454,881 - 38,469,113 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera626,676,228 - 26,690,928 (-)NCBICelera
Cytogenetic Map6q14NCBI
Cenpo
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554696,913,799 - 6,932,206 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554696,913,438 - 6,933,254 (+)NCBIChiLan1.0ChiLan1.0
CENPO
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v212101,703,231 - 101,732,446 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A101,710,529 - 101,736,399 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A24,786,694 - 24,815,926 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A24,881,970 - 24,911,304 (+)NCBIpanpan1.1PanPan1.1panPan2
CENPO
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11719,132,721 - 19,154,431 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1719,141,588 - 19,154,658 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1719,029,610 - 19,054,362 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01719,406,046 - 19,433,213 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1719,414,364 - 19,430,216 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11719,142,567 - 19,169,728 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01719,152,012 - 19,179,182 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01719,192,074 - 19,216,219 (+)NCBIUU_Cfam_GSD_1.0
Cenpo
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629263,488,125 - 63,532,708 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364937,334,617 - 7,352,421 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364937,333,387 - 7,351,368 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CENPO
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl3113,968,902 - 113,979,148 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.13113,968,735 - 113,979,201 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.23121,199,870 - 121,210,029 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Cenpo
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247387,148,294 - 7,162,183 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247387,147,824 - 7,170,287 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium
Low 36 18 60
Below cutoff 2

Sequence


Reference Sequences
RefSeq Acc Id: ENSCSAT00000006558   ⟹   ENSCSAP00000004756
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl1482,854,314 - 82,876,618 (-)Ensembl
RefSeq Acc Id: XM_007971278   ⟹   XP_007969469
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11482,858,696 - 82,875,904 (-)NCBI
Vero_WHO_p1.0NW_02366604529,292,557 - 29,309,618 (+)NCBI
Sequence:
RefSeq Acc Id: XM_007971279   ⟹   XP_007969470
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11482,858,696 - 82,875,837 (-)NCBI
Vero_WHO_p1.0NW_02366604529,292,529 - 29,309,618 (+)NCBI
Sequence:
RefSeq Acc Id: XM_007971280   ⟹   XP_007969471
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11482,857,947 - 82,875,904 (-)NCBI
Vero_WHO_p1.0NW_02366604529,292,557 - 29,312,833 (+)NCBI
Sequence:
RefSeq Acc Id: XM_038006645   ⟹   XP_037862573
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366604529,292,529 - 29,312,833 (+)NCBI
RefSeq Acc Id: XR_492570
Type: NON-CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11482,858,696 - 82,875,904 (-)NCBI
Vero_WHO_p1.0NW_02366604529,292,557 - 29,309,618 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_007969469 (Get FASTA)   NCBI Sequence Viewer  
  XP_007969470 (Get FASTA)   NCBI Sequence Viewer  
  XP_007969471 (Get FASTA)   NCBI Sequence Viewer  
  XP_037862573 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000004756
  ENSCSAP00000004756.1
Reference Protein Sequences
RefSeq Acc Id: XP_007969471   ⟸   XM_007971280
- UniProtKB: A0A0D9R817 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_007969469   ⟸   XM_007971278
- UniProtKB: A0A0D9R817 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_007969470   ⟸   XM_007971279
- UniProtKB: A0A0D9R817 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCSAP00000004756   ⟸   ENSCSAT00000006558
RefSeq Acc Id: XP_037862573   ⟸   XM_038006645
- UniProtKB: A0A0D9R817 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000008498 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000006558.1 UniProtKB/TrEMBL
InterPro CENP-O UniProtKB/TrEMBL
KEGG Report csab:103220663 UniProtKB/TrEMBL
NCBI Gene CENPO ENTREZGENE
PANTHER CENTROMERE PROTEIN O UniProtKB/TrEMBL
  PTHR14582 UniProtKB/TrEMBL
Pfam CENP-O UniProtKB/TrEMBL
UniProt A0A0D9R817 ENTREZGENE, UniProtKB/TrEMBL