SHISA6 (shisa family member 6) - Rat Genome Database

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Gene: SHISA6 (shisa family member 6) Chlorocebus sabaeus
Analyze
Symbol: SHISA6
Name: shisa family member 6
RGD ID: 18690626
Description: ENCODES a protein that exhibits ionotropic glutamate receptor binding (ortholog); PDZ domain binding (ortholog); INVOLVED IN excitatory chemical synaptic transmission (ortholog); negative regulation of canonical Wnt signaling pathway (ortholog); postsynaptic neurotransmitter receptor diffusion trapping (ortholog); ASSOCIATED WITH genetic disease (ortholog); FOUND IN AMPA glutamate receptor complex (ortholog); asymmetric, glutamatergic, excitatory synapse (ortholog); glutamatergic synapse (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: protein shisa-6 homolog
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11610,584,375 - 10,913,012 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605910,348,109 - 10,676,091 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
SHISA6
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11610,584,375 - 10,913,012 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605910,348,109 - 10,676,091 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
SHISA6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381711,241,213 - 11,564,063 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1711,241,213 - 11,564,063 (+)EnsemblGRCh38hg38GRCh38
GRCh371711,144,530 - 11,467,380 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361711,085,465 - 11,402,921 (+)NCBINCBI36Build 36hg18NCBI36
Celera1711,175,533 - 11,498,055 (+)NCBICelera
Cytogenetic Map17p12NCBI
HuRef1711,046,153 - 11,369,076 (+)NCBIHuRef
CHM1_11711,154,593 - 11,476,588 (+)NCBICHM1_1
T2T-CHM13v2.01711,149,418 - 11,472,179 (+)NCBIT2T-CHM13v2.0
Shisa6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391166,102,551 - 66,418,715 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1166,102,551 - 66,416,790 (-)EnsemblGRCm39 Ensembl
GRCm381166,211,725 - 66,527,984 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1166,211,725 - 66,525,964 (-)EnsemblGRCm38mm10GRCm38
MGSCv371166,025,227 - 66,339,628 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361166,027,924 - 66,342,321 (-)NCBIMGSCv36mm8
Celera1173,147,659 - 73,459,932 (-)NCBICelera
Cytogenetic Map11B3NCBI
cM Map1140.55NCBI
Shisa6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81051,396,806 - 51,691,156 (-)NCBIGRCr8
mRatBN7.21050,897,740 - 51,192,111 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1050,903,333 - 51,192,063 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1055,557,614 - 55,846,501 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01055,047,602 - 55,336,481 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01050,556,088 - 50,843,468 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01052,744,069 - 53,037,853 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1052,749,846 - 53,037,816 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01052,498,328 - 52,791,670 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41052,896,362 - 53,190,809 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1050,092,476 - 50,378,235 (-)NCBICelera
Cytogenetic Map10q24NCBI
Shisa6
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554675,707,561 - 5,998,910 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554675,701,521 - 5,998,910 (-)NCBIChiLan1.0ChiLan1.0
SHISA6
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21962,180,636 - 62,505,459 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11766,987,394 - 67,312,139 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01740,081,234 - 40,405,916 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11744,831,076 - 45,154,237 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1744,836,825 - 45,154,241 (-)Ensemblpanpan1.1panPan2
SHISA6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1535,420,981 - 35,701,654 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl535,424,242 - 35,707,012 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha535,562,452 - 35,839,708 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0535,530,964 - 35,808,773 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl535,530,964 - 35,809,747 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1535,496,683 - 35,775,486 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0535,452,119 - 35,729,778 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0535,635,323 - 35,913,764 (+)NCBIUU_Cfam_GSD_1.0
Shisa6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560250,498,911 - 50,836,666 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365954,026,604 - 4,304,857 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365953,973,099 - 4,152,706 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SHISA6
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.11255,757,837 - 56,024,760 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21258,849,892 - 58,898,751 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Shisa6
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462478613,697,330 - 14,001,891 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462478613,697,178 - 14,007,891 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_008010386   ⟹   XP_008008577
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11610,584,375 - 10,913,012 (+)NCBI
Vero_WHO_p1.0NW_02366605910,348,109 - 10,676,091 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008010387   ⟹   XP_008008578
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11610,584,375 - 10,913,012 (+)NCBI
Vero_WHO_p1.0NW_02366605910,348,109 - 10,676,091 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008010389   ⟹   XP_008008580
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11610,584,375 - 10,913,012 (+)NCBI
Vero_WHO_p1.0NW_02366605910,348,109 - 10,675,965 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_008008577 (Get FASTA)   NCBI Sequence Viewer  
  XP_008008578 (Get FASTA)   NCBI Sequence Viewer  
  XP_008008580 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_008008577   ⟸   XM_008010386
- Peptide Label: isoform X1
RefSeq Acc Id: XP_008008578   ⟸   XM_008010387
- Peptide Label: isoform X2
RefSeq Acc Id: XP_008008580   ⟸   XM_008010389
- Peptide Label: isoform X3


Additional Information

Database Acc Id Source(s)
NCBI Gene SHISA6 ENTREZGENE