CCBE1 (collagen and calcium binding EGF domains 1)

Gene: CCBE1 (collagen and calcium binding EGF domains 1) Chlorocebus sabaeus

Analyze

Symbol:

CCBE1

Name:

collagen and calcium binding EGF domains 1

RGD ID:

18689860

Description:

ENCODES a protein that exhibits calcium ion binding (inferred); collagen binding (inferred); protease binding (inferred); INVOLVED IN endothelial cell migration (ortholog); lung development (ortholog); lymph vessel development (ortholog); ASSOCIATED WITH Distal Renal Tubular Acidosis 4 with Hemolytic Anemia (ortholog); Facies (ortholog); genetic disease (ortholog); FOUND IN extracellular matrix (inferred); extracellular space (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

collagen and calcium-binding EGF domain-containing protein 1

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

ChlSab1.1 - Green Monkey 1.1 Assembly

Position:

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	18	20,054,281 - 20,363,024 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	18	20,271,874 - 20,309,784 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666060	5,250,942 - 5,540,578 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Distal Renal Tubular Acidosis 4 with Hemolytic Anemia (ISO)

Facies (ISO)

genetic disease (ISO)

Hennekam Lymphangiectasia-Lymphedema Syndrome 1 (ISO)

Hennekam syndrome (ISO)

hepatocellular carcinoma (ISO)

Hydrops Fetalis (ISO)

immunodeficiency 12 (ISO)

intellectual disability (ISO)

isolated microphthalmia 3 (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

endothelial cell migration (IEA,ISO)

lung development (IEA,ISO)

lymph vessel development (IEA,ISO)

lymphangiogenesis (IEA,ISO)

lymphatic endothelial cell migration (IEA,ISO)

positive regulation of angiogenesis (IEA)

positive regulation of endothelial cell migration (IEA,ISO)

positive regulation of lymphangiogenesis (IEA)

positive regulation of protein processing (IEA)

positive regulation of vascular endothelial growth factor production (IEA)

positive regulation of vascular endothelial growth factor signaling pathway (IEA)

respiratory gaseous exchange by respiratory system (IEA,ISO)

respiratory system process (IEA,ISO)

Cellular Component

extracellular matrix (IEA)

extracellular space (IEA)

Molecular Function

calcium ion binding (IEA)

collagen binding (IEA)

protease binding (IEA)

protein binding (ISO)

References

Additional References at PubMed

PMID:22301074

Genomics

Comparative Map Data

CCBE1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	18	20,054,281 - 20,363,024 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	18	20,271,874 - 20,309,784 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666060	5,250,942 - 5,540,578 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

CCBE1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	18	59,430,939 - 59,697,721 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	18	59,430,939 - 59,697,662 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	18	57,098,171 - 57,364,655 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	18	55,252,124 - 55,515,570 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	18	55,252,128 - 55,515,570	NCBI
Celera	18	53,815,992 - 54,082,692 (-)	NCBI		Celera
Cytogenetic Map	18	q21.32	NCBI
HuRef	18	53,807,272 - 54,074,065 (-)	NCBI		HuRef
CHM1_1	18	57,093,481 - 57,360,274 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	18	59,632,718 - 59,900,788 (-)	NCBI		T2T-CHM13v2.0

Ccbe1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	18	66,189,926 - 66,424,909 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	18	66,178,373 - 66,435,812 (-)	Ensembl		GRCm39 Ensembl
GRCm38	18	66,056,855 - 66,291,838 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	18	66,045,302 - 66,302,741 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	18	66,216,510 - 66,451,492 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	18	66,186,267 - 66,417,201 (-)	NCBI		MGSCv36	mm8
Celera	18	67,332,660 - 67,571,414 (-)	NCBI		Celera
Cytogenetic Map	18	E1	NCBI
cM Map	18	39.13	NCBI

Ccbe1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	18	61,849,821 - 62,093,876 (-)	NCBI		GRCr8
mRatBN7.2	18	59,579,851 - 59,823,977 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	18	59,580,768 - 59,824,400 (-)	Ensembl		mRatBN7.2 Ensembl
Rnor_6.0	18	61,758,754 - 62,013,194 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	18	61,759,289 - 61,788,863 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	18	60,953,314 - 61,204,084 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	18	62,407,265 - 62,442,194 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	18	62,444,950 - 62,516,306 (+)	NCBI
Celera	18	57,703,958 - 57,944,773 (-)	NCBI		Celera
Cytogenetic Map	18	q12.1	NCBI

Ccbe1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955402	43,555,924 - 43,819,706 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955402	43,551,810 - 43,819,731 (-)	NCBI	ChiLan1.0	ChiLan1.0

CCBE1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	17	76,925,872 - 77,237,725 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	18	62,662,702 - 62,930,251 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	18	52,819,591 - 53,087,772 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	18	56,149,036 - 56,412,550 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	18	56,149,036 - 56,412,222 (-)	Ensembl	panpan1.1		panPan2

CCBE1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	1	16,597,389 - 16,819,888 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	1	16,597,334 - 16,819,894 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	1	17,573,095 - 17,795,588 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	1	16,468,211 - 16,697,179 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	1	16,468,224 - 16,697,173 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	1	16,503,987 - 16,732,917 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	1	16,430,870 - 16,653,326 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	1	16,686,056 - 16,915,078 (+)	NCBI		UU_Cfam_GSD_1.0

Ccbe1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404944	30,049,305 - 30,083,693 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936497	5,290,077 - 5,321,876 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936497	5,290,068 - 5,321,656 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CCBE1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	161,321,273 - 161,556,537 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	1	161,320,627 - 161,556,539 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	178,904,622 - 179,130,264 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

Ccbe1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624792	4,867,858 - 5,146,839 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624792	4,863,978 - 5,146,907 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	endocrine system	hemolymphoid system	nervous system
High
Medium	20		6
Low	16	14	35
Below cutoff		4	14

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_008013906	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008013908	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008013909	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008013910	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008013911	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008013912	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_501475	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_501476	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JACDXN010000028	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSCSAT00000016269 ⟹ ENSCSAP00000014189

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1 Ensembl	18	20,271,874 - 20,309,784 (+)	Ensembl

RefSeq Acc Id:

XM_008013906 ⟹ XP_008012097

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	18	20,054,289 - 20,338,439 (+)	NCBI
Vero_WHO_p1.0	NW_023666060	5,250,942 - 5,540,578 (-)	NCBI

Sequence:

show sequence

TGCCCCCACGCGTCTGATTTGATGGGGGAGGGGGCGTTTCCAGCTGTGATGTGCTCGGCATGGA
AACAGTATTAACGCCGCTGAGGGCAAGGAGATGTAAGGCTCCCAGAAAGACCTCCTTACTTGTT
CCGAACTCGAGTTATGAAGAAGACAGAGCATAGTTTATTGACCAATGAAACAACCAGAGAAATT
TCTTCTAAAGGTTTTAAGGAAGAGTGATTATACCATATAAATAGCGCGATTTCAGGTTTGAACA
ATTTGAGAGGCCCGTTTGCCTTTCAACTCCCCCTTCCTCACGTAATCTAAGAGAAAAGAAGACT
AAGATAGTTGAAAAGCGCAGGGTAGGTCCTCAAGGAGGAAAGGCGAACACTGGCCTGACCCTGG
GCTTTAGACACCCATGGACAACAGGAAGGAAGCTTATTAACCCCTCTCCTCCCCCTCCCTCTTC
TCCCTGGTGGAGAATCAGCTCCTCCTCCTCCCGGTCGTTCGACCCTGGTGCAAAATGCAAACAA
CCGCCGGCTTTCCCCACCCTGCGCGGTTCTCCCAGAGGAGGGAGAGGGAAGAGTCGAGGACGCA
GCCCCAAGCCGAGTCCGGGAAGCCTGTCAATCCGGCGTGAAGGTCCCGACGAGACAACTTGGAC
CCCAGGGCCCTCGTGCCGGCCGGACACCGCAGGTGGTGCAAACGCCCCTGCTCTCCGGCGCCCC
CTGCCGGGAAGAGGGAAGGCGGCGGCCGCGGAGGAGCAGGACTCGGGGCCGGGACAGAGCTCGG
CTCTGGGAAGAAGCCGGGAGCTTCCCTGATGGTGCCGCCGCCTCCGAGCCGGGGAGGAGCTGCC
AGGGGCCAGCTGGGCAGGAGCCTGGGTCCGCTGCTGCTGCTCCTGGCGCTGGGACACACGTGGA
CCTACAGAGAGGAGCCGGAGGACGGCGACAGAGAAATCTGCTCAGAGAGTAAAATCGCGACGAC
TAAATACCCGTGTCTGAAGCCTACAGGCGAGCTCACCACATGCTACAGGAAAAAGTGCTGCAAA
GGATATAAATTTGTTCTTGGACAATGCATCCCAGAAGATTACGACGTTTGTGCAGAGGCTCCCT
GTGAACAGCAATGCACAGACAACTTTGGCCGAGTGCTGTGTACTTGTTATCCGGGATACCGATA
TGACCGGGAGAGACACCGGAAGCGGGAGAAGCCATACTGTCTGGATATTGATGAGTGTGCCAGC
AGCAATGGGACGCTGTGTGCCCACATCTGCATCAATACCTTGGGCAGCTACCGCTGCGAGTGCC
GGGAAGGCTACATCCAGGAAGATGATGGGAAGACGTGTACCAAAGGAGACAAATATCCCAATGA
CACTGGCCATGAGAAGTCTGAGAACGCGGTGAAAGCTGGAACTTGCTGTGCCACGTGCAAGGAG
TTCTACCAGATGAAGCAGACCGTGCTGCAGCTGAAGCAAAAGATTGCGCTGCTCCCCAACAATG
CAGCTGACCTGGGCAAGTATATCACCGGTGACAAGGTGCTGGCCTCAAACGCCTACCTTCCTGG
ACCTCCTGGCCTGCCGGGGGGCCAGGGCCCACCCGGCTCACCAGGACCAAAGGGAAGCCCAGGC
TTCCCCGGTATGCCAGGCCCTCCTGGGCAGCCCGGTCCACGGGGCTCAATGGGACCCATGGGAC
CATCTCCTGATCTGTCCCACATTAAACAAGGCCGGAGGGGCCCTGTGGGTCCACCAGGTGCACC
AGGACGAGATGGTTCTAAGGGGGAGAGAGGAGCGCCTGGGCCCAGAGGGTCTCCACGTCTCCTG
CAGTTCCAAGCTGACACGGCAGATGGTGCAGTTGAATCGCCCAGGGAGCCTCAGCACAGCGGCC
TGTCACCTCTCCACCAGGCAGCTGCCGCAAGCTGCATTCACTGGGACAAACCTACCTACCTTCT
AGAATGTGAGTCAGATGTGGCAGTGGCCCTGCAGGCGGCAGCAATGGCAGTGTCACAACACAGA
CTGAGATTTCGCTTCAACGCCGAACCGCTTGGGGGCTCTCATGGATGCAAAGTGTGTCGTTTCC
TTGTCGAAGGACAGTGAAGGCAGGTGTTTGCTGCTCTCCTGCAGGCTCTTGGGCATGTTTCAGA
TGTACTTCTTTAGGGACCAAGCTCTCATCAAATTAATATTCTGTCCGTAAGGCAGGTTCTGTTA
ATTACCTCGGTTTAATGAAGTTTTTCTTTTGGAAACAGAGAGAATGTGTTGATTCTCCATTTTT
TGGTCCGCTTGAGTGAAGGAAAGTTGATGTTCTAGGCTGGATACAAGACTGAAATAGGATATTC
AGAGGCAGCTTCTTACAGATGACCACCTTTTCGTAACAGCCATTAGAATTATATGAGCTTTAAT
CCTGCACCTAACTTTGCAGGGTTTCCTCCTCCAAGAAGCAGGGTTAGCACTGGGCCAACGACAA
ACAAGTGAAGGGCTTGGGTTAGGATACCTATGTTACAACTGCAGAATGTCAAGCACAGGAGCAG
TCACTACAGCTTGCCAGGGCAGAGCCCACAGAAGTAATATTCCAAAACAACATATTTCCATATT
ATTCCAGTGCAGCAGAATGGCTGGGGGCTGCAAGTTGCATTTGAACAGCATTTCTCAACCTTAT
CAGACCTAATACCCCGCTGTCATAACAAATACTGTGTAACTCTCCCCTCTAGTATCCC

hide sequence

RefSeq Acc Id:

XM_008013908 ⟹ XP_008012099

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	18	20,054,322 - 20,310,962 (+)	NCBI
Vero_WHO_p1.0	NW_023666060	5,279,679 - 5,540,578 (-)	NCBI

Sequence:

show sequence

GCGTTTCCAGCTGTGATGTGCTCGGCATGGAAACAGTATTAACGCCGCTGAGGGCAAGGAGATG
TAAGGCTCCCAGAAAGACCTCCTTACTTGTTCCGAACTCGAGTTATGAAGAAGACAGAGCATAG
TTTATTGACCAATGAAACAACCAGAGAAATTTCTTCTAAAGGTTTTAAGGAAGAGTGATTATAC
CATATAAATAGCGCGATTTCAGGTTTGAACAATTTGAGAGGCCCGTTTGCCTTTCAACTCCCCC
TTCCTCACGTAATCTAAGAGAAAAGAAGACTAAGATAGTTGAAAAGCGCAGGGTAGGTCCTCAA
GGAGGAAAGGCGAACACTGGCCTGACCCTGGGCTTTAGACACCCATGGACAACAGGAAGGAAGC
TTATTAACCCCTCTCCTCCCCCTCCCTCTTCTCCCTGGTGGAGAATCAGCTCCTCCTCCTCCCG
GTCGTTCGACCCTGGTGCAAAATGCAAACAACCGCCGGCTTTCCCCACCCTGCGCGGTTCTCCC
AGAGGAGGGAGAGGGAAGAGTCGAGGACGCAGCCCCAAGCCGAGTCCGGGAAGCCTGTCAATCC
GGCGTGAAGGTCCCGACGAGACAACTTGGACCCCAGGGCCCTCGTGCCGGCCGGACACCGCAGG
TGGTGCAAACGCCCCTGCTCTCCGGCGCCCCCTGCCGGGAAGAGGGAAGGCGGCGGCCGCGGAG
GAGCAGGACTCGGGGCCGGGACAGAGCTCGGCTCTGGGAAGAAGCCGGGAGCTTCCCTGATGGT
GCCGCCGCCTCCGAGCCGGGGAGGAGCTGCCAGGGGCCAGCTGGGCAGGAGCCTGGGTCCGCTG
CTGCTGCTCCTGGCGCTGGGACACACGTGGACCTACAGAGAGGAGCCGGAGGACGGCGACAGAG
AAATCTGCTCAGAGAGTAAAATCGCGACGACTAAATACCCGTGTCTGAAGCCTACAGGCGAGCT
CACCACATGCTACAGGAAAAAGTGCTGCAAAGGATATAAATTTGTTCTTGGACAATGCATCCCA
GAAGATTACGACGTTTGTGCAGAGGCTCCCTGTGAACAGCAATGCACAGACAACTTTGGCCGAG
TGCTGTGTACTTGTTATCCGGGATACCGATATGACCGGGAGAGACACCGGAAGCGGGAGAAGCC
ATACTGTCTGGATATTGATGAGTGTGCCAGCAGCAATGGGACGCTGTGTGCCCACATCTGCATC
AATACCTTGGGCAGCTACCGCTGCGAGTGCCGGGAAGGCTACATCCAGGAAGATGATGGGAAGA
CGTGTACCAAAGGAGACAAATATCCCAATGACACTGGCCATGAGAAGTCTGAGAACGCGGTGAA
AGCTGGAACTTGCTGTGCCACGTGCAAGGAGTTCTACCAGATGAAGCAGACCGTGCTGCAGCTG
AAGCAAAAGATTGCGCTGCTCCCCAACAATGCAGCTGACCTGGGCAAGTATATCACCGGTGACA
AGGTGCTGGCCTCAAACGCCTACCTTCCTGGACCTCCTGGCCTGCCGGGGGGCCAGGGCCCACC
CGGCTCACCAGGACCAAAGGGAAGCCCAGGCTTCCCCGGTATGCCAGGCCCTCCTGGGCAGCCC
GGTCCACGGGGCTCAATGGGACCCATGGGACCATCTCCTGATCTGTCCCACATTAAACAAGGCC
GGAGGGGCCCTGTGGGTCCACCAGGTGCACCAGGACGAGATGGTTCTAAGGGGGAGAGAGGAGC
GCCTGGGCCCAGAGGGTCTCCAGGACCCCCTGGTTCTTTCGACTTCCTGCTACTTATGCTGGCT
GACATCCGCAATGACATCACCGAGCTGCAGGAAAAGGTGTTCGGGCACCGGACTCACTCTTCAG
CAGAGGAGTTCCCTTTATCTCAGGAATTTCCCAGCTACCCAGAAGCCATGGACCTGGGCTCTGG
AGACGACCACCCAAGAAGAACTGAGACAAGAGACTTGAGAGCCCCTAGAGACTTCTATCCATAG
CACATCCCAACACCATCATGCCAAAGGAAGAGAAAGATCAACTCATCTGCAGTTAAACCATCTA
AAGAGAAAAAAACACCACTGGAGACCTAGAAAACATACATTTTTCTCTTCTCTTCTCCTGACAT
CTCTCTATTCCTCTTCTTCCAGATACAATACTATTTTCAGAGTCCCCTCCTAGGCCTGCAGACA
CGTGGGAATGAATGATTGATTTACCTGCTTCTTACTAAGAGTTCATTGGAGTGGTTTGCATTGT
AACTTTTCATTTACATCCTATTTTTCCAGGAACTTTGGATTTAAGTACTCTCACAGTGTCTTAA
ATCATAAATTCTTCAAGTTAAATTTGGCAGAGTATCAAAAGGGAAGATGGCAAAGTGAGCTCTA
AGAAAATGTGAGGCTACTTCTAAGATGTGTGTTCAGAATAGACCGTAACTCCTCTAGTATCAAA
ATTAGGGCTCTTCATTTAAAAAGGGGTGGGGAGGACAAACATGTAGATGTACTTTGGTGGAGAA
TTCTTTTTTTTTAAAGAATATAGTAGCAAATCTACTAGAATTGCTTCTAGTAGATTTTAAATAT
TGTATGCCCTTGTCAAACGTTTCCCAAATTCAATTAAAGAGAGGAGAGAACTGAATGACATTTA
GAGAAGATAGAAAAGAATTACAGTCACATATTTACTGTTACATAGATTGCCACATTCTAAAATT
CAACTATGGTGCTTAAGGTTTCATGCCATGCTTATCTGTAAGTATCCTATTTAGGGAAGAAGAT
TAAATCCTCGTTTCAAAAAACAAAGTGAAATGCCTGGATTCACATTAAAACAGTGGGCTCTGGT
TTGCCAGAATATTTTAAAGCTGTTTAATCAAGAGTGGAGCCTGCTGTATACATCAGAGATTATT
TGTTCAATAAAGTGGCTGACCTTAGAGGCACAGAATTCCTGGTTCTGAGCAGGTGCCCAGAAGG
TGCCATTAGGTGCCATGATCCAGGCTGAACCAATATACAGTGGGGCTGAAGGCTGCAAGGAAGT
TGCTGGCTTGGGTTGACCTCACTAACGCCATCAGCAGCAGTAGGTAAATTTGCTCTCCTTGGGT
GTTACAAGTTTTTGTCTGGAGCCAACCAAGCTTGCCACTAACATATTGAGAATAATACACTATT
GAAAGTTATCTTGGATGGGGAGAAAA

hide sequence

Protein Sequences


Protein RefSeqs	XP_008012097	(Get FASTA)	NCBI Sequence Viewer
	XP_008012099	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCSAP00000014189
	ENSCSAP00000014189.1

RefSeq Acc Id:	XP_008012097 ⟸ XM_008013906
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_008012099 ⟸ XM_008013908
- Peptide Label:	isoform X2
- UniProtKB:	A0A0D9S000 (UniProtKB/TrEMBL)

RefSeq Acc Id:

ENSCSAP00000014189 ⟸ ENSCSAT00000016269

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCSAG00000018174	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCSAT00000016269.1	UniProtKB/TrEMBL
Gene3D-CATH	Laminin	UniProtKB/TrEMBL
InterPro	Collagen	UniProtKB/TrEMBL
	EGF-like_Ca-bd_dom	UniProtKB/TrEMBL
	EGF-like_dom	UniProtKB/TrEMBL
	EGF-type_Asp/Asn_hydroxyl_site	UniProtKB/TrEMBL
	EGF_Ca-bd_CS	UniProtKB/TrEMBL
NCBI Gene	CCBE1	ENTREZGENE
PANTHER	COLLAGEN	UniProtKB/TrEMBL
	SCAVENGER RECEPTOR CLASS A MEMBER 3	UniProtKB/TrEMBL
Pfam	Collagen	UniProtKB/TrEMBL
	EGF_CA	UniProtKB/TrEMBL
PROSITE	ASX_HYDROXYL	UniProtKB/TrEMBL
	EGF_2	UniProtKB/TrEMBL
	EGF_3	UniProtKB/TrEMBL
	EGF_CA	UniProtKB/TrEMBL
SMART	EGF	UniProtKB/TrEMBL
	EGF_CA	UniProtKB/TrEMBL
Superfamily-SCOP	EGF/Laminin	UniProtKB/TrEMBL
UniProt	A0A0D9S000	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

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Imported Disease Annotations - OMIM

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM