SLC25A44 (solute carrier family 25 member 44) - Rat Genome Database

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Gene: SLC25A44 (solute carrier family 25 member 44) Chlorocebus sabaeus
Analyze
Symbol: SLC25A44
Name: solute carrier family 25 member 44
RGD ID: 18688429
Description: ENCODES a protein that exhibits branched-chain amino acid transmembrane transporter activity (inferred); INVOLVED IN regulation of cold-induced thermogenesis (ortholog); ASSOCIATED WITH Charcot-Marie-Tooth disease type 2 (ortholog); gastrointestinal stromal tumor (ortholog); genetic disease (ortholog); FOUND IN membrane (inferred); mitochondrion (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1207,655,836 - 7,675,356 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl207,655,834 - 7,675,190 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660386,950,036 - 6,969,703 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
membrane  (IEA)
mitochondrion  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
SLC25A44
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1207,655,836 - 7,675,356 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl207,655,834 - 7,675,190 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660386,950,036 - 6,969,703 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
SLC25A44
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381156,194,104 - 156,212,796 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1156,193,932 - 156,212,796 (+)EnsemblGRCh38hg38GRCh38
GRCh371156,163,895 - 156,182,587 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361154,430,523 - 154,449,211 (+)NCBINCBI36Build 36hg18NCBI36
Celera1129,236,709 - 129,255,567 (+)NCBICelera
Cytogenetic Map1q22NCBI
HuRef1127,525,453 - 127,544,319 (+)NCBIHuRef
CHM1_11157,559,700 - 157,578,555 (+)NCBICHM1_1
T2T-CHM13v2.01155,332,555 - 155,351,250 (+)NCBIT2T-CHM13v2.0
Slc25a44
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39388,317,801 - 88,334,303 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl388,317,805 - 88,332,446 (-)EnsemblGRCm39 Ensembl
GRCm38388,410,494 - 88,425,141 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl388,410,498 - 88,425,139 (-)EnsemblGRCm38mm10GRCm38
MGSCv37388,214,417 - 88,229,061 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36388,496,425 - 88,511,045 (-)NCBIMGSCv36mm8
Celera388,450,135 - 88,464,782 (-)NCBICelera
Cytogenetic Map3F1NCBI
cM Map338.82NCBI
Slc25a44
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82176,166,136 - 176,180,965 (-)NCBIGRCr8
mRatBN7.22173,868,317 - 173,883,137 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2173,868,320 - 173,883,020 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2181,012,522 - 181,027,209 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02179,034,883 - 179,049,570 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02173,634,938 - 173,649,639 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02187,772,013 - 187,786,829 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2187,774,062 - 187,786,731 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02207,174,512 - 207,189,328 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42180,512,111 - 180,526,810 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12180,464,533 - 180,476,814 (-)NCBI
Celera2167,813,048 - 167,827,747 (-)NCBICelera
Cytogenetic Map2q34NCBI
Slc25a44
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555452,347,844 - 2,364,935 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555452,347,951 - 2,364,935 (+)NCBIChiLan1.0ChiLan1.0
SLC25A44
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2193,631,670 - 93,653,209 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1193,363,568 - 93,385,182 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01131,535,399 - 131,556,750 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11135,366,043 - 135,387,643 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1135,366,049 - 135,387,643 (+)Ensemblpanpan1.1panPan2
SLC25A44
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1741,630,868 - 41,665,894 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl741,630,098 - 41,665,791 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha741,118,651 - 41,155,784 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0741,495,306 - 41,532,574 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl741,496,715 - 41,532,560 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1741,276,605 - 41,313,724 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0741,329,782 - 41,366,873 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0741,613,895 - 41,651,236 (-)NCBIUU_Cfam_GSD_1.0
Slc25a44
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505826,405,455 - 26,424,014 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365805,435,730 - 5,454,759 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365805,435,841 - 5,454,396 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC25A44
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl493,837,009 - 93,857,158 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1493,837,004 - 93,857,154 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24102,579,411 - 102,599,563 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Slc25a44
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248851,500,255 - 1,517,481 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248851,500,837 - 1,517,481 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium 36 54
Low 20 6
Below cutoff

Sequence


RefSeq Acc Id: ENSCSAT00000000122   ⟹   ENSCSAP00000015930
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl207,655,834 - 7,675,190 (-)Ensembl
RefSeq Acc Id: XM_007976749   ⟹   XP_007974940
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1207,655,836 - 7,675,356 (-)NCBI
Vero_WHO_p1.0NW_0236660386,950,036 - 6,969,703 (-)NCBI
Sequence:
RefSeq Acc Id: XM_037997775   ⟹   XP_037853703
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_0236660386,950,036 - 6,969,703 (-)NCBI
RefSeq Acc Id: XM_037997776   ⟹   XP_037853704
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_0236660386,950,036 - 6,969,703 (-)NCBI
Protein Sequences
Protein RefSeqs XP_007974940 (Get FASTA)   NCBI Sequence Viewer  
  XP_037853703 (Get FASTA)   NCBI Sequence Viewer  
  XP_037853704 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000015930
  ENSCSAP00000015930.1
RefSeq Acc Id: XP_007974940   ⟸   XM_007976749
- Peptide Label: isoform X1
- UniProtKB: A0A0D9S4Z1 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCSAP00000015930   ⟸   ENSCSAT00000000122
RefSeq Acc Id: XP_037853703   ⟸   XM_037997775
- Peptide Label: isoform X2
RefSeq Acc Id: XP_037853704   ⟸   XM_037997776
- Peptide Label: isoform X3


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000002104 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000000122.1 UniProtKB/TrEMBL
Gene3D-CATH 1.50.40.10 UniProtKB/TrEMBL
InterPro Mit_carrier UniProtKB/TrEMBL
  Mitochondrial_sb/sol_carrier UniProtKB/TrEMBL
  Mt_carrier_dom_sf UniProtKB/TrEMBL
  SLC25A44 UniProtKB/TrEMBL
KEGG Report csab:103223841 UniProtKB/TrEMBL
NCBI Gene SLC25A44 ENTREZGENE
PANTHER PTHR46314 UniProtKB/TrEMBL
  SOLUTE CARRIER FAMILY 25 MEMBER 44 UniProtKB/TrEMBL
Pfam Mito_carr UniProtKB/TrEMBL
PRINTS MITOCARRIER UniProtKB/TrEMBL
PROSITE SOLCAR UniProtKB/TrEMBL
Superfamily-SCOP SSF103506 UniProtKB/TrEMBL
UniProt A0A0D9S4Z1 ENTREZGENE, UniProtKB/TrEMBL