CCL26 (C-C motif chemokine ligand 26) - Rat Genome Database

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Pathways
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Gene: CCL26 (C-C motif chemokine ligand 26) Chlorocebus sabaeus
Analyze
Symbol: CCL26
Name: C-C motif chemokine ligand 26
RGD ID: 18684286
Description: ENCODES a protein that exhibits CCR3 chemokine receptor binding (inferred); chemokine activity (inferred); CX3C chemokine receptor binding (inferred); INVOLVED IN response to organonitrogen compound (ortholog); PARTICIPATES IN interleukin-4 signaling pathway; ASSOCIATED WITH allergic asthma (ortholog); allergic rhinitis (ortholog); asthma (ortholog); FOUND IN extracellular region (inferred); extracellular space (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: C-C motif chemokine 26
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Alliance Genes
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12810,036,177 - 10,038,962 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2810,036,337 - 10,038,875 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660706,400,433 - 6,403,167 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
CCL26
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12810,036,177 - 10,038,962 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2810,036,337 - 10,038,875 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660706,400,433 - 6,403,167 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
CCL26
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38775,769,524 - 75,791,597 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl775,769,533 - 75,789,896 (-)EnsemblGRCh38hg38GRCh38
GRCh37775,398,842 - 75,420,915 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36775,236,778 - 75,257,000 (-)NCBINCBI36Build 36hg18NCBI36
Build 34775,043,492 - 75,063,715NCBI
Celera770,266,590 - 70,286,812 (-)NCBICelera
Cytogenetic Map7q11.23NCBI
HuRef770,484,790 - 70,505,408 (-)NCBIHuRef
CHM1_1775,328,822 - 75,349,108 (-)NCBICHM1_1
T2T-CHM13v2.0777,056,596 - 77,078,673 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2774,731,906 - 74,752,128 (-)NCBI
Ccl26
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395135,589,302 - 135,592,423 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5135,589,302 - 135,592,423 (-)EnsemblGRCm39 Ensembl
GRCm385135,560,448 - 135,563,569 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5135,560,448 - 135,563,569 (-)EnsemblGRCm38mm10GRCm38
MGSCv375136,036,318 - 136,039,439 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365135,845,075 - 135,848,196 (-)NCBIMGSCv36mm8
Celera5132,571,981 - 132,575,102 (-)NCBICelera
Cytogenetic Map5G2NCBI
cM Map575.27NCBI
Ccl26
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81226,745,972 - 26,750,924 (+)NCBIGRCr8
mRatBN7.21221,109,384 - 21,114,336 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1221,109,421 - 21,114,335 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1222,251,193 - 22,256,123 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01222,863,537 - 22,868,467 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01221,930,001 - 21,934,931 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01224,157,182 - 24,161,870 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1224,158,766 - 24,161,869 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01226,154,496 - 26,159,229 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41222,265,430 - 22,268,793 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1222,873,373 - 22,876,736 (+)NCBICelera
Cytogenetic Map12q12NCBI
Ccl26
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495545614,554,583 - 14,558,967 (-)NCBIChiLan1.0ChiLan1.0
CCL26
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2694,180,602 - 94,184,888 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan17142,445,240 - 142,449,526 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0768,230,804 - 68,251,369 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1782,221,846 - 82,242,874 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl782,221,846 - 82,242,874 (-)Ensemblpanpan1.1panPan2
CCL26
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.167,151,352 - 7,154,509 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl67,151,212 - 7,154,726 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha68,848,112 - 8,851,272 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.066,971,954 - 6,975,124 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl66,971,814 - 6,981,222 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.166,941,498 - 6,944,666 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.066,904,900 - 6,908,069 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.067,068,177 - 7,071,344 (-)NCBIUU_Cfam_GSD_1.0
Ccl26
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344131,619,608 - 131,626,877 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365432,414,850 - 2,416,953 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365432,414,948 - 2,416,922 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CCL26
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl310,381,306 - 10,385,677 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1310,381,306 - 10,385,677 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium 22 20
Low 14 14 28
Below cutoff 3 8

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_008018365 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JACDXN010000038 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSCSAT00000016252   ⟹   ENSCSAP00000014172
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl2810,036,337 - 10,038,875 (-)Ensembl
RefSeq Acc Id: XM_008018365   ⟹   XP_008016556
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.12810,036,177 - 10,038,962 (-)NCBI
Vero_WHO_p1.0NW_0236660706,400,433 - 6,403,167 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_008016556 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000014172
  ENSCSAP00000014172.1
Reference Protein Sequences
RefSeq Acc Id: XP_008016556   ⟸   XM_008018365
- UniProtKB: A0A0D9RZY3 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCSAP00000014172   ⟸   ENSCSAT00000016252


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000018155 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000016252.1 UniProtKB/TrEMBL
Gene3D-CATH 2.40.50.40 UniProtKB/TrEMBL
InterPro Chemokine_b/g/d UniProtKB/TrEMBL
  Chemokine_CC_CS UniProtKB/TrEMBL
  Chemokine_IL8-like_dom UniProtKB/TrEMBL
  Interleukin_8-like_sf UniProtKB/TrEMBL
KEGG Report csab:103246652 UniProtKB/TrEMBL
NCBI Gene CCL26 ENTREZGENE
PANTHER C-C MOTIF CHEMOKINE 26 UniProtKB/TrEMBL
  PTHR12015 UniProtKB/TrEMBL
Pfam IL8 UniProtKB/TrEMBL
PROSITE SMALL_CYTOKINES_CC UniProtKB/TrEMBL
SMART SCY UniProtKB/TrEMBL
Superfamily-SCOP SSF54117 UniProtKB/TrEMBL
UniProt A0A0D9RZY3 ENTREZGENE, UniProtKB/TrEMBL