TMEM92 (transmembrane protein 92)

Gene: TMEM92 (transmembrane protein 92) Chlorocebus sabaeus

Analyze

Symbol:

TMEM92

Name:

transmembrane protein 92

RGD ID:

18683604

Description:

ASSOCIATED WITH Developmental Disabilities (ortholog); genetic disease (ortholog); osteogenesis imperfecta type 1 (ortholog); FOUND IN membrane (inferred); nucleoplasm (inferred)

Type:

protein-coding

RefSeq Status:

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

ChlSab1.1 - Green Monkey 1.1 Assembly

Position:

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	16	43,055,096 - 43,063,637 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	16	43,055,815 - 43,060,639 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666077	13,769,145 - 13,776,459 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Developmental Disabilities (ISO)

genetic disease (ISO)

osteogenesis imperfecta type 1 (ISO)

trichodontoosseous syndrome (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Cellular Component

membrane (IEA)

nucleoplasm (IEA)

Molecular Function

protein binding (ISO)

References

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

TMEM92
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	16	43,055,096 - 43,063,637 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	16	43,055,815 - 43,060,639 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666077	13,769,145 - 13,776,459 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

TMEM92
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	17	50,271,406 - 50,281,485 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	17	50,271,406 - 50,281,485 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	17	48,348,767 - 48,358,846 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	17	45,706,832 - 45,713,843 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	17	44,810,072 - 44,820,146 (+)	NCBI		Celera
Cytogenetic Map	17	q21.33	NCBI
HuRef	17	43,717,155 - 43,727,231 (+)	NCBI		HuRef
CHM1_1	17	48,413,058 - 48,423,136 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	17	51,138,488 - 51,148,563 (+)	NCBI		T2T-CHM13v2.0

Tmem92
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	11	94,668,043 - 94,673,529 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	11	94,668,043 - 94,673,529 (-)	Ensembl		GRCm39 Ensembl
GRCm38	11	94,777,217 - 94,782,703 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	11	94,777,217 - 94,782,703 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	11	94,638,531 - 94,644,017 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	11	94,593,307 - 94,598,793 (-)	NCBI		MGSCv36	mm8
Celera	11	104,403,575 - 104,409,055 (-)	NCBI		Celera
Cytogenetic Map	11	D	NCBI
cM Map	11	58.94	NCBI

Tmem92
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	80,246,205 - 80,257,650 (-)	NCBI		GRCr8
mRatBN7.2	10	79,749,242 - 79,760,807 (-)	NCBI	mRatBN7.2	mRatBN7.2
Rnor_6.0	10	82,545,238 - 82,575,822 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	10	82,393,209 - 82,396,101 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	10	83,462,754 - 83,474,811 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	10	78,530,382 - 78,534,071 (-)	NCBI		Celera
Cytogenetic Map	10	q26	NCBI

Tmem92
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955451	11,402,598 - 11,407,002 (-)	NCBI	ChiLan1.0	ChiLan1.0

TMEM92
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	19	66,457,593 - 66,470,329 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	17	71,269,494 - 71,276,892 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	17	44,364,574 - 44,371,932 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	17	49,239,079 - 49,246,446 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	17	49,239,079 - 49,246,446 (+)	Ensembl	panpan1.1		panPan2

TMEM92
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	9	26,256,371 - 26,261,283 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	9	26,256,260 - 26,261,056 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	9	25,649,451 - 25,654,343 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	9	27,051,115 - 27,056,005 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	9	27,051,040 - 27,057,633 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	9	25,818,636 - 25,823,526 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	9	26,077,298 - 26,082,188 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	9	26,207,281 - 26,212,174 (+)	NCBI		UU_Cfam_GSD_1.0

Tmem92
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	25,682,870 - 25,687,665 (+)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936490	11,387,480 - 11,392,246 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

TMEM92
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	12	26,452,882 - 26,472,864 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	12	26,466,613 - 26,472,865 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	12	26,497,395 - 26,503,639 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

Tmem92
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624795	6,240,481 - 6,244,561 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	endocrine system	hemolymphoid system	nervous system
High
Medium
Low	1	15	1
Below cutoff	18	3	19

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_008011518	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008011519	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008011520	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008011521	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008011522	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008011523	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JACDXN010000045	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSCSAT00000003388 ⟹ ENSCSAP00000001666

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1 Ensembl	16	43,055,815 - 43,060,639 (-)	Ensembl

RefSeq Acc Id:

XM_008011518 ⟹ XP_008009709

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	16	43,055,096 - 43,060,908 (-)	NCBI
Vero_WHO_p1.0	NW_023666077	13,769,145 - 13,776,399 (-)	NCBI

Sequence:

show sequence

ATTACCTGGCATTACCAGCGTGAGCCGCGCCCGGAGGTAGAAGAGATTAACAGAAAAATCTGTT
AATCTCTTCTACCTCCCAATTCCCAAAACCCAACCGAGACCTCTGCGCCTCCCTTCCTCCTCCC
AGCCCCTCCCTGCCCCGAGTCCGCCTCTCCCGGTGCAGCTCCGCCCCCATCCCGAGGCGGGGCC
CCATAGATGGAGAGAAGTGGGAGAGGTCGGAGCCCCGCCTTCTCTACACAGGAAAGCTCAGTGG
CCCCCAAGCCAGGATGTCCCAAGCTTGGGTGACCGGCCTCGCGCCCACCTTGCTGCTCAGCCTG
CTGGCTAGCCCCCAAAAGGTTGCAGCCAAATGTGGTTTCATCTTCAACTGCCCCAAAGGATTCA
AATGCTGTGGTGACAGCTGCTGCCAGGAGAACGAAATCTTCCCTGGCCCCGTGAGGATCTTCGT
CATCATCTTCCTGGTCATCCTGTCCCTCTTTTGCATCTGTGGCCTGGCTAAGTGCTTCTGTCGC
AACTGCAAAGAGCCGGAGCCAGACGCCCCAATGGATTGCCGGGGGCCCCTGGAACTGCCCTCCA
TCATCCCTCCAGAGAGGGTCAGAGTATCCCCCTCTGCACCCCCACCCCCCTACAGTGAGGTGAT
TCTGAAGCCCAGCCTGGGCCCAATTCCCACAGAGCCACCCCCTCCCTACAGCTTCAGGCCTGAA
GAATATACCGGGGATCGGAGGGGCATTGACAACCCGGCCTTCTGAGTCACCTCCTGCCTGGAAG
CTTGCGATCAGCAGCCTCCTCCCCAGTGCCTCCTGGATCAAGCTAGAGACTGCTGGCACCCCAG
GAATGTCCCTGCCCATCCTGCCATGTCTCTGTTCATTCTTGGATTTAATTTATTACTTTTTCTG
CCTCTGTTTCCACCCCAGCTACCTCTCTTGTCCTGAGGGTTAGGCTGGAGTGACAGTATCTGCC
CCCCAACCAACCCAAGAAAGAGGATGCCAGGAGGAAAATGCCAACCATTGGAGGTGCCCAACAG
CAGAATGGGCTACTCTGAGGGGTAGTAAGAGCCCCATTTCTGGAGGTATGCAAATCTTGACTGG
ACAGCCAGCTCTGAGATTTTATCAGGGCACTTCTACACCTGTGGGACATTGGACTGGATGAGCT
CTAAGCCAGCTTCCACTCCTACCTGAATAGAGAACTCACTGTACCCACCCACAACACAGGATAA
ACACATGTCCTCACTGAATGTTACTGAATGTTACAGGCTGAGGGCCTGCCTCTGGCTGTGTGGG
GAGGTGGGTGGAGAGGTGAGTCCAGACACTGCTGGGGGGTGTGGTGATGGGGTCGCTGTGCCGC
AGTCCCACCACTGATGAGCCATCTGGGAGGATAGTCCATCCGTGGGCCGCTCTTGGTGCTTGTT
CTAGATGCTTTGGCTGTCTGTTTTTTGATGTCTCTGTGTGCCAAAGAGCCTGGAAATGGA

hide sequence

RefSeq Acc Id:

XM_008011519 ⟹ XP_008009710

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	16	43,055,096 - 43,060,956 (-)	NCBI
Vero_WHO_p1.0	NW_023666077	13,769,145 - 13,776,459 (-)	NCBI

Sequence:

show sequence

AACTCCTGACCTGAAGTGATCTGCCCGCCTCGGCCTCCCAAGGAAAGCTCAGTGGCCCCCAAGC
CAGGATGTCCCAAGCTTGGGTGACCGGCCTCGCGCCCACCTTGCTGCTCAGCCTGCTGGCTAGC
CCCCAAAAGGTTGCAGCCAAATGTGGTTTCATCTTCAACTGCCCCAAAGGATTCAAATGCTGTG
GTGACAGCTGCTGCCAGGAGAACGAAATCTTCCCTGGCCCCGTGAGGATCTTCGTCATCATCTT
CCTGGTCATCCTGTCCCTCTTTTGCATCTGTGGCCTGGCTAAGTGCTTCTGTCGCAACTGCAAA
GAGCCGGAGCCAGACGCCCCAATGGATTGCCGGGGGCCCCTGGAACTGCCCTCCATCATCCCTC
CAGAGAGGGTCAGAGTATCCCCCTCTGCACCCCCACCCCCCTACAGTGAGGTGATTCTGAAGCC
CAGCCTGGGCCCAATTCCCACAGAGCCACCCCCTCCCTACAGCTTCAGGCCTGAAGAATATACC
GGGGATCGGAGGGGCATTGACAACCCGGCCTTCTGAGTCACCTCCTGCCTGGAAGCTTGCGATC
AGCAGCCTCCTCCCCAGTGCCTCCTGGATCAAGCTAGAGACTGCTGGCACCCCAGGAATGTCCC
TGCCCATCCTGCCATGTCTCTGTTCATTCTTGGATTTAATTTATTACTTTTTCTGCCTCTGTTT
CCACCCCAGCTACCTCTCTTGTCCTGAGGGTTAGGCTGGAGTGACAGTATCTGCCCCCCAACCA
ACCCAAGAAAGAGGATGCCAGGAGGAAAATGCCAACCATTGGAGGTGCCCAACAGCAGAATGGG
CTACTCTGAGGGGTAGTAAGAGCCCCATTTCTGGAGGTATGCAAATCTTGACTGGACAGCCAGC
TCTGAGATTTTATCAGGGCACTTCTACACCTGTGGGACATTGGACTGGATGAGCTCTAAGCCAG
CTTCCACTCCTACCTGAATAGAGAACTCACTGTACCCACCCACAACACAGGATAAACACATGTC
CTCACTGAATGTTACTGAATGTTACAGGCTGAGGGCCTGCCTCTGGCTGTGTGGGGAGGTGGGT
GGAGAGGTGAGTCCAGACACTGCTGGGGGGTGTGGTGATGGGGTCGCTGTGCCGCAGTCCCACC
ACTGATGAGCCATCTGGGAGGATAGTCCATCCGTGGGCCGCTCTTGGTGCTTGTTCTAGATGCT
TTGGCTGTCTGTTTTTTGATGTCTCTGTGTGCCAAAGAGCCTGGAAATGGA

hide sequence

Protein Sequences


Protein RefSeqs	XP_008009709	(Get FASTA)	NCBI Sequence Viewer
	XP_008009710	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCSAP00000001666
	ENSCSAP00000001666.1

RefSeq Acc Id:	XP_008009710 ⟸ XM_008011519
- UniProtKB:	A0A0D9QZ77 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_008009709 ⟸ XM_008011518
- UniProtKB:	A0A0D9QZ77 (UniProtKB/TrEMBL)

RefSeq Acc Id:

ENSCSAP00000001666 ⟸ ENSCSAT00000003388

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCSAG00000005357	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCSAT00000003388.1	UniProtKB/TrEMBL
KEGG Report	csab:103242939	UniProtKB/TrEMBL
NCBI Gene	TMEM92	ENTREZGENE
PANTHER	TRANSMEMBRANE PROTEIN 92	UniProtKB/TrEMBL
	TRANSMEMBRANE PROTEIN 92	UniProtKB/TrEMBL
UniProt	A0A0D9QZ77	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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