Advanced Search (OLGA)

Gene: MEIKIN (meiotic kinetochore factor) Chlorocebus sabaeus

Analyze

Symbol:

MEIKIN

Name:

meiotic kinetochore factor

RGD ID:

18679602

Description:

INVOLVED IN female meiosis chromosome segregation (ortholog); homologous chromosome segregation (ortholog); male meiosis chromosome segregation (ortholog); ASSOCIATED WITH schizophrenia (ortholog); FOUND IN condensed chromosome, centromeric region (ortholog); kinetochore (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

probable GPI-anchored adhesin-like protein PGA55; uncharacterized protein LOC103244499

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

ChlSab1.1 - Green Monkey 1.1 Assembly

Position:

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	23	34,648,698 - 34,779,680 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666034	43,178,775 - 43,311,699 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

schizophrenia (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

female meiosis chromosome segregation (ISO)

homologous chromosome segregation (ISO)

male meiosis chromosome segregation (ISO)

meiotic sister chromatid cohesion involved in meiosis I (ISO)

meiotic sister chromatid cohesion, centromeric (ISO)

Cellular Component

condensed chromosome, centromeric region (ISO)

kinetochore (ISO)

Molecular Function

protein binding (ISO)

References

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

MEIKIN
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	23	34,648,698 - 34,779,680 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666034	43,178,775 - 43,311,699 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

MEIKIN
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	5	131,806,990 - 131,945,663 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	5	131,806,990 - 131,945,698 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	5	131,142,683 - 131,281,356 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	5	131,242,497 - 131,309,290 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	5	127,344,687 - 127,411,474 (-)	NCBI		Celera
Cytogenetic Map	5	q31.1	NCBI
HuRef	5	126,335,199 - 126,473,954 (-)	NCBI		HuRef
CHM1_1	5	130,575,716 - 130,714,237 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	5	132,326,854 - 132,465,546 (-)	NCBI		T2T-CHM13v2.0

Meikin
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	11	54,261,478 - 54,317,616 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	11	54,261,478 - 54,317,616 (+)	Ensembl		GRCm39 Ensembl
GRCm38	11	54,370,652 - 54,426,790 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	11	54,370,652 - 54,426,790 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	11	54,184,154 - 54,240,257 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	11	54,205,542 - 54,270,213 (+)	NCBI		MGSCv36	mm8
Celera	11	58,959,563 - 59,014,489 (+)	NCBI		Celera
Cytogenetic Map	11	B1.3	NCBI
cM Map	11	32.13	NCBI

Meikin
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	39,008,881 - 39,057,412 (+)	NCBI		GRCr8
mRatBN7.2	10	38,508,156 - 38,556,732 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	38,508,170 - 38,556,546 (+)	Ensembl		mRatBN7.2 Ensembl
Rnor_6.0	10	39,726,373 - 39,776,458 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	39,726,507 - 39,751,398 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	10	39,497,672 - 39,549,480 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	10	39,788,007 - 39,836,674 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	10	37,848,433 - 37,898,013 (+)	NCBI		Celera
Cytogenetic Map	10	q22	NCBI

Meikin
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955408	3,244,704 - 3,331,985 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955408	3,245,147 - 3,331,795 (-)	NCBI	ChiLan1.0	ChiLan1.0

MEIKIN
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	4	127,124,568 - 127,266,732 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	5	125,264,172 - 125,406,295 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	5	127,229,311 - 127,369,783 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	5	133,394,105 - 133,533,078 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	5	133,394,105 - 133,533,078 (-)	Ensembl	panpan1.1		panPan2

MEIKIN
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	11	20,143,941 - 20,221,665 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	11	20,144,240 - 20,220,105 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	11	18,939,803 - 19,017,311 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	11	20,921,647 - 20,999,376 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	11	20,921,946 - 20,997,846 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	11	19,648,957 - 19,726,534 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	11	19,496,455 - 19,574,027 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	11	20,137,787 - 20,215,615 (-)	NCBI		UU_Cfam_GSD_1.0

Meikin
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024407213	116,215,578 - 116,272,902 (+)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936647	3,218,383 - 3,270,571 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

MEIKIN
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	134,104,890 - 134,207,138 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	2	134,103,568 - 134,208,250 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	2	139,473,126 - 139,563,654 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

Meikin
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624733	40,162,071 - 40,243,544 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624733	40,161,901 - 40,243,260 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in MEIKIN
1725 total Variants

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_008014346	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008014347	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008014348	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038008250	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JACDXN010000002	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

XM_008014346 ⟹ XP_008012537

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	23	34,648,818 - 34,779,680 (-)	NCBI
Vero_WHO_p1.0	NW_023666034	43,178,775 - 43,311,699 (+)	NCBI

Sequence:

show sequence

AAAAAAAAAAAAAAAAAAAAAAAAAAAGAAGAAGAAGAAACTGATTGGTCTGGTGTAGCAACAA
GTTGAGGCCCAGGGCACAAGGAGGAGAGTCCCTGTGGAATCTTCTACCTTAACCATAAGGATAC
CCAAATGTCTAGAGATGGCTCCTGGACACAGGCTAAGGGACTCTCTTTGTCGTCCAGAAGCAGC
CTCCTAGAGCCCGGGATCTTCAAAGGCTTGGTTAGACTCTTAATTACCATAGCCTCCCAGTAAG
TTGGAGGCCCAGGGAACTGAAGTTGATACCTCGGGGAGAAGCTCCTCGTCACTTTAAGGTGCAT
TCAGTCCTCTTTGTGACCTTCCTGCACTGAGGCCGACCCCTCACAAGACTGCCTGTGCTGGTGG
TCTAAAACTCCATTACTAAGGCCTTATGCAGTGGTGATAGGGAGAGCTCGCTCAGAGGAAGTGT
TGGGCCCATCCAAAGGAGCGAAGGCCTTTACTCCTTCATGCCCAATTGAATTAAGCATGCAGCC
ACAGGGGAAACCTAAGTGCTCAGACCGAGGAGGAGGGGCTGAATTAAACCTTTTTCAGGACGAG
GAAGAAGTTTTTTTCAAAAAATTCCCATTTCGCTGGAGTTCAGGGAGCCTGCGCCAGCGGCCCA
GTAACCACGAGGCCCCTACAGGAGGGCTGGACGGCTGCCGCGTTCCTCCGTTTTCCCAGAAGCC
TCTGCGCGGCCTCAAGGAGATAAAAAGGCGGGAGCGAGGCCCAGCGGCTCCAGTTCTGGGGCTT
TTGCTTTCGCTCGGTTAATTGCTGTGGGGCTGCTCTGTGGGGCTGCTCTGCGCCTCGCCTGGCC
GCTGACTCCCTGCGACTTAGCCCTAATCCTCAGGAAGGCAGGCCATCAGGGTCCAGAGGCACCC
AAGGCCTGGGGGTAGGGTGGGATAGCAATGTGGCCGCTACGGGTATATACCCGCAAAAAGCGGG
CGGGTCAGAGGCTCAATCTCACCCCGACGCCAGACCTAGGCTCTCCCGCGAAGGCGGAGGCCCC
ACCAGGTTCGACGAGAAAAGGCAAGGTGCACGGCTTGTCGAAGATTGCAGAGAAAGCGGAGTGG
AGCAGGCAGGGAAGTAGCGGCTCTGGGCTGCCCAGCCCTCGCTTAAGAGTTACAGGAGAGAAAA
GTCTGCAAGAAAATAGGTCTAGTGAAGACACCCAGGATGAGAAGATTGCACCGTTGAGTGAATC
AGTTACTGACGACCTCCAGGTTGATCGTAGTTCATCAAATAGTGAACTAGTATCAGGATTAAGT
TTGCACCATGGTATGGCCAGTTCTCCTCTGAGCTATTCAGTAACAGACTCTTATGCAGAATACA
AGAGTTTTGAAGAGAGCTTTCCATCACCTGAACTGTTCAGAAAATCAGATTATTTAGACTGGGA
GTGTCCCAACTTGGAAGAACACATGCAGTGGAAGAATTCTACTCTTCTGGATACCAGTAAAGCA
GTAGCGATAGAGAAGGCACCACAGTTTTCAAATGTCTCTGCAATTTTAAGTACCTCTTCAGAAG
ACTATCAGAAATGCCACAGAGAAACAGTGATGACAGTAGCAAATCAAAATGTGTCTCCAAAAGC
AAAGTGTGCTTCAAATTCAGAATCAGATAATGCAGCTTGTGAGATTTTACTTGCTGAGAAAACT
TGCCCTTCAATCCCTGAAAAAACAAAGAAAAAAAAAGCAAATTCCAGTACTCCTGGTAAGAAAA
ACAGAGGCCTTTTAACAAGTACCCCATCTTCAGAGACAGCTGGTTTTGTGATTGATTTGTCCTC
AGTGCAAAAAGCATCTTTTGAAGAACTATTTCCAAATGTCAGCAATTATGTTAATTCAAATGAA
ATTGTTCCTGTGTCAAGTTTGCAGGAAAATTCTTCAAATGAGTTACCTGCAAATACATCAGAAA
TATGTTGTATTATTAGAGCATCACCAGGAGGAACTAGACAAGTGAAAAATAAAGGTGTTATTGT
AAAGAAGAAGAAATATTCTCTTCCTAAGGATATCCCTCAAGATATCATAATAAAAATGGCATGA
AAAAACAGCTGTGGCTGAATTTTCACTACTTTGAAGACAGGAATGTGAAGTCAAAGTCTATAAA
GCAGAATGTCTGCCTGAAATTATATGAAATTAAAAATTAAAAATTCTCCAGTTATTTGTGATA

hide sequence

RefSeq Acc Id:

XM_038008250 ⟹ XP_037864178

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
Vero_WHO_p1.0	NW_023666034	43,178,775 - 43,311,699 (+)	NCBI

Protein Sequences


Protein RefSeqs	XP_008012537	(Get FASTA)	NCBI Sequence Viewer
	XP_037864178	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	XP_008012537 ⟸ XM_008014346
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_037864178 ⟸ XM_038008250
- Peptide Label:	isoform X2

Additional Information

External Database Links

Database	Acc Id	Source(s)
NCBI Gene	MEIKIN	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Send us a Message

Imported Disease Annotations - ClinVar