NCR2 (natural cytotoxicity triggering receptor 2) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: NCR2 (natural cytotoxicity triggering receptor 2) Chlorocebus sabaeus
Analyze
Symbol: NCR2
Name: natural cytotoxicity triggering receptor 2
RGD ID: 18675037
Description: ASSOCIATED WITH genetic disease (ortholog); infantile Refsum disease (ortholog); Zellweger syndrome (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Pig
Alliance Genes
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11730,804,363 - 30,823,729 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604441,332,993 - 41,348,383 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
NCR2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11730,804,363 - 30,823,729 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604441,332,993 - 41,348,383 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
NCR2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38641,335,608 - 41,350,889 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl641,335,608 - 41,350,889 (+)EnsemblGRCh38hg38GRCh38
GRCh37641,303,346 - 41,318,627 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36641,411,506 - 41,426,603 (+)NCBINCBI36Build 36hg18NCBI36
Build 34641,411,504 - 41,426,593NCBI
Celera642,856,966 - 42,872,064 (+)NCBICelera
Cytogenetic Map6p21.1NCBI
HuRef641,022,061 - 41,037,158 (+)NCBIHuRef
CHM1_1641,306,785 - 41,321,882 (+)NCBICHM1_1
T2T-CHM13v2.0641,164,903 - 41,180,184 (+)NCBIT2T-CHM13v2.0
A530064D06Rik
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391748,459,064 - 48,474,425 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1748,456,296 - 48,474,443 (-)EnsemblGRCm39 Ensembl
GRCm381748,151,896 - 48,167,257 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1748,149,126 - 48,167,275 (-)EnsemblGRCm38mm10GRCm38
MGSCv371748,288,846 - 48,304,207 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361747,615,089 - 47,630,409 (-)NCBIMGSCv36mm8
Celera1751,587,306 - 51,602,664 (-)NCBICelera
Cytogenetic Map17CNCBI
cM Map1723.99NCBI
Ncr2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8920,274,057 - 20,324,708 (+)NCBIGRCr8
mRatBN7.2912,777,195 - 12,828,437 (+)NCBImRatBN7.2mRatBN7.2
Rnor_6.0914,779,496 - 14,787,872 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0913,700,866 - 13,709,496 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.498,229,376 - 8,238,097 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.198,227,133 - 8,275,380 (+)NCBI
Celera910,590,049 - 10,601,579 (+)NCBICelera
Cytogenetic Map9q12NCBI
NCR2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2555,831,126 - 55,846,428 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1651,701,153 - 51,716,506 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0640,923,354 - 40,938,684 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1642,231,316 - 42,246,355 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl642,231,316 - 42,246,355 (+)Ensemblpanpan1.1panPan2
LOC609023
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11210,047,445 - 10,056,019 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1210,076,759 - 10,085,345 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01210,526,638 - 10,534,177 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.11210,058,441 - 10,067,026 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01210,140,381 - 10,148,963 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01210,235,212 - 10,242,752 (+)NCBIUU_Cfam_GSD_1.0
NCR2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1736,545,752 - 36,553,129 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2741,836,629 - 41,846,889 (+)NCBISscrofa10.2Sscrofa10.2susScr3


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_007972632 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JACDXN010000012 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_007972632   ⟹   XP_007970823
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11730,804,363 - 30,823,729 (-)NCBI
Vero_WHO_p1.0NW_02366604441,332,993 - 41,348,383 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_007970823 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_007970823   ⟸   XM_007972632


Additional Information

Database Acc Id Source(s)
NCBI Gene NCR2 ENTREZGENE