WDR97 (WD repeat domain 97) - Rat Genome Database

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Gene: WDR97 (WD repeat domain 97) Chlorocebus sabaeus
Analyze
Symbol: WDR97
Name: WD repeat domain 97
RGD ID: 18674690
Description:
Type: protein-coding
RefSeq Status: MODEL
Previously known as: LOC103237606; LOC103237731; WD repeat-containing protein 97; WD repeat-containing protein KIAA1875-like
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.18138,322,976 - 138,327,761 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl8138,319,103 - 138,327,663 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660391,544,110 - 1,552,772 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
WDR97
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.18138,322,976 - 138,327,761 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl8138,319,103 - 138,327,663 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660391,544,110 - 1,552,772 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
WDR97
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh388144,107,739 - 144,118,328 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl8144,107,726 - 144,118,328 (+)EnsemblGRCh38hg38GRCh38
GRCh378145,162,642 - 145,173,231 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 368145,234,623 - 145,245,206 (+)NCBINCBI36Build 36hg18NCBI36
Celera8141,500,152 - 141,510,742 (+)NCBICelera
Cytogenetic Map8q24.3NCBI
HuRef8140,438,512 - 140,449,102 (+)NCBIHuRef
CHM1_18145,203,012 - 145,213,602 (+)NCBICHM1_1
T2T-CHM13v2.08145,268,535 - 145,279,125 (+)NCBIT2T-CHM13v2.0
Wdr97
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391576,238,649 - 76,249,141 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1576,238,632 - 76,249,401 (+)EnsemblGRCm39 Ensembl
GRCm381576,354,449 - 76,364,941 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1576,354,432 - 76,365,201 (+)EnsemblGRCm38mm10GRCm38
MGSCv371576,184,974 - 76,192,269 (+)MERGEGRCm37MGSCv37mm9NCBIm37
Celera1577,854,510 - 77,863,925 (+)NCBICelera
Cytogenetic Map15D3NCBI
Wdr97
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87109,958,945 - 109,967,687 (+)NCBIGRCr8
mRatBN7.27108,078,280 - 108,087,028 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7108,078,337 - 108,087,034 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.07117,420,779 - 117,429,497 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7117,420,788 - 117,429,504 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07117,408,407 - 117,417,227 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47114,405,497 - 114,414,108 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera7104,430,636 - 104,439,354 (+)NCBICelera
Cytogenetic Map7q34NCBI
Wdr97
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554542,769,387 - 2,777,921 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554542,769,356 - 2,778,024 (+)NCBIChiLan1.0ChiLan1.0
WDR97
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v27161,597,299 - 161,605,993 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan18137,127,180 - 137,139,612 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v08140,874,055 - 140,882,725 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.18143,865,981 - 143,874,738 (+)NCBIpanpan1.1PanPan1.1panPan2
WDR97
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11337,601,804 - 37,612,044 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1337,565,502 - 37,577,451 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01338,078,032 - 38,090,010 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1338,076,846 - 38,088,425 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11337,750,090 - 37,760,466 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01337,878,770 - 37,889,123 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01338,354,949 - 38,366,912 (+)NCBIUU_Cfam_GSD_1.0
Wdr97
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303638,033 - 647,015 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049364708,064,132 - 8,073,157 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
WDR97
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.14588,629 - 597,333 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24741,756 - 750,444 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Wdr97
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473512,706,710 - 12,715,795 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCSAT00000006769   ⟹   ENSCSAP00000004966
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl8138,319,103 - 138,327,663 (+)Ensembl
RefSeq Acc Id: XM_038000002   ⟹   XP_037855930
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_0236660391,544,110 - 1,552,772 (-)NCBI
Protein Sequences
Protein RefSeqs XP_037855930 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000004966.1
Reference Protein Sequences
RefSeq Acc Id: XP_037855930   ⟸   XM_038000002
- UniProtKB: A0A0D9R8M7 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCSAP00000004966   ⟸   ENSCSAT00000006769


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000008737 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000006769.1 UniProtKB/TrEMBL
Gene3D-CATH 2.130.10.10 UniProtKB/TrEMBL
InterPro WD40/YVTN_repeat-like_dom_sf UniProtKB/TrEMBL
  WD40_repeat UniProtKB/TrEMBL
  WD40_repeat_CS UniProtKB/TrEMBL
  WD40_repeat_dom_sf UniProtKB/TrEMBL
NCBI Gene LOC103237731 ENTREZGENE
PANTHER WD REPEAT-CONTAINING PROTEIN 97 UniProtKB/TrEMBL
  WD REPEAT-CONTAINING PROTEIN 97 UniProtKB/TrEMBL
Pfam WD40 UniProtKB/TrEMBL
PROSITE WD_REPEATS_1 UniProtKB/TrEMBL
  WD_REPEATS_2 UniProtKB/TrEMBL
  WD_REPEATS_REGION UniProtKB/TrEMBL
SMART WD40 UniProtKB/TrEMBL
Superfamily-SCOP SSF50978 UniProtKB/TrEMBL
UniProt A0A0D9R8M7 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-12-08 WDR97  WD repeat domain 97  LOC103237731  WD repeat-containing protein KIAA1875-like  Symbol and/or name change 5135510 APPROVED
2020-12-03 LOC103237731  WD repeat-containing protein KIAA1875-like  LOC103237606  WD repeat-containing protein KIAA1875-like  Data merged from RGD:18372744 737654 PROVISIONAL