CAVIN2 (caveolae associated protein 2) - Rat Genome Database

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Gene: CAVIN2 (caveolae associated protein 2) Chlorocebus sabaeus
Analyze
Symbol: CAVIN2
Name: caveolae associated protein 2
RGD ID: 18672172
Description: ENCODES a protein that exhibits phosphatidylserine binding (inferred); protein kinase C binding (inferred); INVOLVED IN plasma membrane tubulation (inferred); ASSOCIATED WITH genetic disease (ortholog); Hirschsprung's disease (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN caveola (inferred); cytoplasm (inferred); cytosol (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: caveolae-associated protein 2; SDPR; serum deprivation response; serum deprivation-response protein
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11077,371,220 - 77,384,574 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666040122,090,276 - 122,103,217 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
CAVIN2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11077,371,220 - 77,384,574 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666040122,090,276 - 122,103,217 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
CAVIN2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382191,834,310 - 191,847,088 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2191,834,310 - 191,847,088 (-)EnsemblGRCh38hg38GRCh38
GRCh372192,699,036 - 192,711,814 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362192,407,281 - 192,420,226 (-)NCBINCBI36Build 36hg18NCBI36
Build 342192,525,246 - 192,537,296NCBI
Celera2186,294,205 - 186,307,180 (-)NCBICelera
Cytogenetic Map2q32.3NCBI
HuRef2184,557,290 - 184,570,265 (-)NCBIHuRef
CHM1_12192,705,004 - 192,717,980 (-)NCBICHM1_1
T2T-CHM13v2.02192,322,523 - 192,335,302 (-)NCBIT2T-CHM13v2.0
Cavin2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39151,328,285 - 51,342,119 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl151,328,285 - 51,342,119 (+)EnsemblGRCm39 Ensembl
GRCm38151,289,126 - 51,302,960 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl151,289,126 - 51,302,960 (+)EnsemblGRCm38mm10GRCm38
MGSCv37151,345,970 - 51,359,804 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36151,233,671 - 51,247,505 (+)NCBIMGSCv36mm8
Celera151,588,665 - 51,602,512 (+)NCBICelera
Cytogenetic Map1C1.1NCBI
cM Map126.13NCBI
Cavin2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8957,794,007 - 57,806,024 (-)NCBIGRCr8
mRatBN7.2950,302,079 - 50,314,096 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl950,301,206 - 50,314,147 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx958,844,832 - 58,856,873 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0963,967,673 - 63,979,714 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0962,263,643 - 62,275,680 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0955,244,136 - 55,256,153 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl955,243,255 - 55,256,340 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0954,940,738 - 54,952,755 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4947,373,044 - 47,385,061 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1947,374,457 - 47,386,475 (-)NCBI
Celera947,939,632 - 47,951,653 (-)NCBICelera
Cytogenetic Map9q22NCBI
Cavin2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554037,458,900 - 7,471,257 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554037,459,038 - 7,471,809 (+)NCBIChiLan1.0ChiLan1.0
CAVIN2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21394,508,021 - 94,520,975 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B94,523,005 - 94,535,934 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B79,127,676 - 79,140,585 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B197,042,366 - 197,055,326 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B197,042,366 - 197,055,326 (-)Ensemblpanpan1.1panPan2
CAVIN2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1372,300,301 - 2,307,957 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha373,248,356 - 3,262,084 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0372,188,764 - 2,202,518 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl372,188,758 - 2,202,518 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1372,198,415 - 2,212,031 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0372,165,704 - 2,180,655 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0372,178,440 - 2,192,258 (-)NCBIUU_Cfam_GSD_1.0
Cavin2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303150,371,498 - 150,384,175 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365066,453,652 - 6,466,770 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365066,453,914 - 6,466,574 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CAVIN2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1596,474,284 - 96,490,016 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11596,476,675 - 96,490,231 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.215107,752,053 - 107,765,594 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Cavin2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248544,354,024 - 4,364,992 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248544,354,099 - 4,364,992 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: XM_038001832   ⟹   XP_037857760
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_023666040122,090,276 - 122,103,217 (+)NCBI
Protein Sequences
Protein RefSeqs XP_037857760 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000008223.1
RefSeq Acc Id: XP_037857760   ⟸   XM_038001832
- UniProtKB: A0A0D9RHY4 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000012033 UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000010124.1 UniProtKB/TrEMBL
InterPro Cavin_fam UniProtKB/TrEMBL
NCBI Gene CAVIN2 ENTREZGENE
PANTHER CAVEOLAE-ASSOCIATED PROTEIN 2 UniProtKB/TrEMBL
  CAVIN UniProtKB/TrEMBL
Pfam PTRF_SDPR UniProtKB/TrEMBL
UniProt A0A0D9RHY4 ENTREZGENE, UniProtKB/TrEMBL