LRRC72 (leucine rich repeat containing 72)

Gene: LRRC72 (leucine rich repeat containing 72) Chlorocebus sabaeus

Analyze

Symbol:

LRRC72

Name:

leucine rich repeat containing 72

RGD ID:

18669221

Description:

ASSOCIATED WITH congenital muscular dystrophy-dystroglycanopathy A7 (ortholog); genetic disease (ortholog); pleomorphic xanthoastrocytoma (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

leucine-rich repeat-containing protein 72

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

ChlSab1.1 - Green Monkey 1.1 Assembly

Position:

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	21	41,535,353 - 41,584,785 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	21	41,535,423 - 41,584,284 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666042	62,926,275 - 62,975,691 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

congenital muscular dystrophy-dystroglycanopathy A7 (ISO)

genetic disease (ISO)

pleomorphic xanthoastrocytoma (ISO)

References

Additional References at PubMed

PMID:22301074

Genomics

Comparative Map Data

LRRC72
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	21	41,535,353 - 41,584,785 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	21	41,535,423 - 41,584,284 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666042	62,926,275 - 62,975,691 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

LRRC72
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	7	16,526,825 - 16,581,568 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	7	16,526,825 - 16,581,568 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	7	16,566,450 - 16,621,193 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Celera	7	16,546,301 - 16,600,867 (+)	NCBI		Celera
Cytogenetic Map	7	p21.1	NCBI
HuRef	7	16,453,033 - 16,507,799 (+)	NCBI		HuRef
CHM1_1	7	16,566,267 - 16,620,873 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	7	16,656,531 - 16,711,287 (+)	NCBI		T2T-CHM13v2.0
CRA_TCAGchr7v2	7	16,619,635 - 16,674,253 (+)	NCBI

Lrrc72
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	12	36,258,328 - 36,306,395 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	12	36,258,344 - 36,303,397 (-)	Ensembl		GRCm39 Ensembl
GRCm38	12	36,208,329 - 36,256,396 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	12	36,208,345 - 36,253,398 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	12	36,934,932 - 36,979,985 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	12	36,718,611 - 36,728,468 (-)	NCBI		MGSCv36	mm8
Celera	12	37,658,688 - 37,703,782 (-)	NCBI		Celera
Cytogenetic Map	12	A3	NCBI
cM Map	12	16.63	NCBI

Lrrc72
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	6	58,662,611 - 58,722,844 (-)	NCBI		GRCr8
mRatBN7.2	6	52,935,387 - 52,995,552 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	6	52,935,387 - 52,995,540 (-)	Ensembl		mRatBN7.2 Ensembl
Rnor_6.0	6	55,694,269 - 55,757,234 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	6	55,694,470 - 55,711,146 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	6	65,308,461 - 65,368,142 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	6	54,929,069 - 55,004,458 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	6	52,077,685 - 52,138,062 (-)	NCBI		Celera
Cytogenetic Map	6	q16	NCBI

Lrrc72
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955410	19,714,223 - 19,774,630 (+)	NCBI	ChiLan1.0	ChiLan1.0

LRRC72
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	6	21,355,253 - 21,417,602 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	7	69,679,976 - 69,742,325 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	7	17,180,011 - 17,238,810 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	7	16,507,468 - 16,563,220 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	7	16,507,468 - 16,564,320 (+)	Ensembl	panpan1.1		panPan2

LRRC72
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	14	31,079,128 - 31,112,986 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	14	31,079,220 - 31,112,982 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	14	30,600,369 - 30,634,225 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	14	30,998,824 - 31,032,950 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	14	30,998,637 - 31,032,936 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	14	31,101,605 - 31,135,445 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	14	30,813,840 - 30,847,729 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	14	31,126,669 - 31,160,552 (+)	NCBI		UU_Cfam_GSD_1.0

Lrrc72
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	75,391,984 - 75,445,137 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936546	3,074,285 - 3,120,123 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936546	3,067,206 - 3,120,300 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

LRRC72
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	9	85,803,242 - 85,844,792 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	9	85,811,382 - 85,844,726 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

Lrrc72
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624739	13,618,927 - 13,702,796 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624739	13,617,233 - 13,715,897 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	endocrine system	hemolymphoid system	nervous system
High
Medium
Low		10	6
Below cutoff	5	8	34

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_007981980	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_007981981	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JACDXN010000010	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSCSAT00000011523 ⟹ ENSCSAP00000009592

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1 Ensembl	21	41,535,423 - 41,584,284 (-)	Ensembl

RefSeq Acc Id:

XM_007981980 ⟹ XP_007980171

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	21	41,535,353 - 41,584,785 (-)	NCBI
Vero_WHO_p1.0	NW_023666042	62,926,275 - 62,975,691 (+)	NCBI

Sequence:

show sequence

TCAGAAGTACTGGCCATTTTCCTTTTGCGTCAAGATCCACAGTGACTCTGCAGGGCACCTCGTC
ACCCCCACCCTGTACGTGAGGCCAGTGGTCCACACACACGTCTAATTTTCAGAAACCTAAATTT
CCTGATATTCAAATCTCGAATCAAAGTGATGATTACTGGGTGACTGCTGTTGAGGCGCTCTGAC
CTCCTCCTGGTCCCGGACATAGCTGAACCCCTCTCTCCGGCATCCACCGCACGCATCACCACGA
GCAGGGATAACACACGTGTGTCCGAGGCGCAAGCGTGGGTGTTACAGAGTCACACGCGCAAACG
TCACAGAAGTCAGCGTTTGGCTTCAAATATTTCCCAGTGTGGACTGGCTTTTAGTCAACGGGAA
TGCGGTAACTGTTGGTAACAGAACAATGAGCTGCGCGCCAAGCCAAGTCTCTCTTCGGTGCCAC
CCGCGGGCGAGGCCGGATTAATCACCGCTGCTGCCGGCGGCCCATGTGTCCTGATGTCCTGGAA
CCCGAACCCCGTTCCCCGTGCCTTGAAATGCTGGAGCCTACGGAGGGCGTCCGAAACTGCCCTA
CAGAGCAGTCGCCGGGCAGTTGAAGATCAACTAAAGATACGTGGCCACAAGAGGGATGCTGATG
TCTTCGAGCTGTTCCTTTCTAAAAAGGAACTGACAGAGGTCATTGATCTTTCTAGGTTTAAAAA
ATTAAAATACTTATGGCTTCATCATAACAAGCTCCATGGAATAACATTTCTAACTAGAAACGAT
TGTCTGACAGAACTGTATCTAAACAATAATGCAATATTTGAGATAGAAGGCCTGCATTGTTTGC
CTTCATTGAATATACTCCTGCTACACCACAATGAGTTAACCAATATTGATGCAACAGTGAAGGA
ATTACAGGGAATGCTAAATCTGAAGATCCTAAGTCTATACCAAAATCCTTTGTGCCAATATAAC
CTGTATCGTTTATATATCATCTACCACCTTCCAGGAGTGGAGCTGCTTGACCGAAATCAAGTTA
CAGAAAAAGAAAGAAGATCAATGATTACCATTTTTAACCATAAAAAGGCTCATATCGTTCAAAC
AATAGCATTCAGAGGAAAAGTAGACGCTTCATGGGGTCCTAAATCACCATTTAAGCAAAAACCA
GCCCAGAGAGTACCTTCAGATTTTGGATTTGCAAATAATGTAGACAAAACTGTGTTCGATGACC
CAGAAGATGCTGTTTTTGTGAGGTCCATGAAGAGATCAGTGATGACTTTGACCTCTATGAACTG
GAACACAGTTCCAACACGAGAGGAAAGATACCTCGAAGAGGAAGGCACAGAGCCGGCTCAAATG
CTCACAGTTACACTGAGATGAGCCCTGGTATTTCTAGAAATCATAGTGGTTTTCAATTGTATAT
TAAACTTCCCCGTGACTTAGCGTATTA

hide sequence

Protein Sequences


Protein RefSeqs	XP_007980171	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCSAP00000009592.1

RefSeq Acc Id:	XP_007980171 ⟸ XM_007981980
- UniProtKB:	A0A0D9RLV3 (UniProtKB/TrEMBL)

RefSeq Acc Id:

ENSCSAP00000009592 ⟸ ENSCSAT00000011523

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCSAG00000013450	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCSAT00000011523.1	UniProtKB/TrEMBL
Gene3D-CATH	3.80.10.10	UniProtKB/TrEMBL
InterPro	Leu-rich_rpt	UniProtKB/TrEMBL
	LRC72	UniProtKB/TrEMBL
	LRR_dom_sf	UniProtKB/TrEMBL
KEGG Report	csab:103226445	UniProtKB/TrEMBL
NCBI Gene	LRRC72	ENTREZGENE
PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN 72	UniProtKB/TrEMBL
	PTHR46759	UniProtKB/TrEMBL
Pfam	LRR_9	UniProtKB/TrEMBL
PROSITE	LRR	UniProtKB/TrEMBL
SMART	LRR_SD22	UniProtKB/TrEMBL
Superfamily-SCOP	L domain-like	UniProtKB/TrEMBL
UniProt	A0A0D9RLV3	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar