RNF31 (ring finger protein 31) - Rat Genome Database

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Gene: RNF31 (ring finger protein 31) Chlorocebus sabaeus
Analyze
Symbol: RNF31
Name: ring finger protein 31
RGD ID: 18668053
Description: ENCODES a protein that exhibits identical protein binding (ortholog); ubiquitin binding (ortholog); ubiquitin protein ligase binding (ortholog); INVOLVED IN CD40 signaling pathway (ortholog); defense response to bacterium (ortholog); negative regulation of necroptotic process (ortholog); PARTICIPATES IN nuclear factor kappa B signaling pathway; tumor necrosis factor mediated signaling pathway; ASSOCIATED WITH Brain-Lung-Thyroid Syndrome (ortholog); Dwarfism (ortholog); genetic disease (ortholog); FOUND IN CD40 receptor complex (ortholog); cytoplasmic side of plasma membrane (ortholog); cytosol (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: E3 ubiquitin-protein ligase RNF31
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1241,133,589 - 1,146,020 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl241,133,723 - 1,142,943 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603612,815,243 - 12,828,730 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
RNF31
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1241,133,589 - 1,146,020 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl241,133,723 - 1,142,943 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603612,815,243 - 12,828,730 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
RNF31
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381424,146,875 - 24,160,655 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1424,146,683 - 24,160,660 (+)EnsemblGRCh38hg38GRCh38
GRCh371424,616,084 - 24,629,864 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361423,686,499 - 23,699,710 (+)NCBINCBI36Build 36hg18NCBI36
Build 341423,686,545 - 23,699,706NCBI
Celera144,481,127 - 4,494,338 (+)NCBICelera
Cytogenetic Map14q12NCBI
HuRef144,731,723 - 4,744,834 (+)NCBIHuRef
CHM1_11424,615,328 - 24,628,520 (+)NCBICHM1_1
T2T-CHM13v2.01418,345,184 - 18,358,964 (+)NCBIT2T-CHM13v2.0
Rnf31
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391455,829,199 - 55,841,131 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1455,829,165 - 55,841,150 (+)EnsemblGRCm39 Ensembl
GRCm381455,591,713 - 55,603,674 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1455,591,708 - 55,603,693 (+)EnsemblGRCm38mm10GRCm38
MGSCv371456,210,627 - 56,222,508 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361454,545,861 - 54,557,742 (+)NCBIMGSCv36mm8
Celera1453,396,850 - 53,408,731 (+)NCBICelera
Cytogenetic Map14C3NCBI
cM Map1428.19NCBI
Rnf31
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81533,053,450 - 33,065,285 (+)NCBIGRCr8
mRatBN7.21529,083,047 - 29,095,328 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1529,083,631 - 29,101,915 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1530,929,372 - 30,941,042 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01532,076,578 - 32,088,240 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01530,318,920 - 30,330,582 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01534,270,037 - 34,282,385 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1534,270,648 - 34,282,495 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01538,160,162 - 38,172,580 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41533,727,541 - 33,739,204 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11533,742,598 - 33,754,894 (+)NCBI
Celera1528,659,586 - 28,671,248 (+)NCBICelera
Cytogenetic Map15p13NCBI
Rnf31
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540936,240,008 - 36,252,166 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540936,240,008 - 36,252,166 (-)NCBIChiLan1.0ChiLan1.0
RNF31
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21525,501,815 - 25,515,053 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11424,718,334 - 24,731,545 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0144,923,391 - 4,936,959 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11423,047,893 - 23,061,923 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1423,047,893 - 23,061,923 (+)Ensemblpanpan1.1panPan2
RNF31
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.184,141,501 - 4,151,999 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha84,063,194 - 4,073,688 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.084,252,081 - 4,262,575 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl84,252,109 - 4,302,591 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.183,942,711 - 3,953,203 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.084,004,452 - 4,014,942 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.084,266,613 - 4,277,106 (+)NCBIUU_Cfam_GSD_1.0
Rnf31
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864035,991,236 - 36,003,020 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936722385,971 - 398,030 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936722385,972 - 397,718 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
Rnf31
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248208,375,871 - 8,388,569 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248208,376,530 - 8,388,596 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium 36 13 44
Low 7 16
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSCSAT00000014176   ⟹   ENSCSAP00000012155
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl241,133,723 - 1,142,943 (+)Ensembl
RefSeq Acc Id: XM_007986294   ⟹   XP_007984485
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1241,133,589 - 1,146,020 (+)NCBI
Vero_WHO_p1.0NW_02366603612,815,243 - 12,828,730 (+)NCBI
Sequence:
RefSeq Acc Id: XM_037985453   ⟹   XP_037841381
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366603612,815,713 - 12,828,730 (+)NCBI
Protein Sequences
Protein RefSeqs XP_007984485 (Get FASTA)   NCBI Sequence Viewer  
  XP_037841381 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000012155.1
Reference Protein Sequences
RefSeq Acc Id: XP_007984485   ⟸   XM_007986294
- Peptide Label: isoform X1
- UniProtKB: A0A0D9RU66 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_037841381   ⟸   XM_037985453
- Peptide Label: isoform X2
- UniProtKB: A0A0D9RU66 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCSAP00000012155   ⟸   ENSCSAT00000014176


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000016083 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000014176.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.120.1750 UniProtKB/TrEMBL
  1.20.58.2190 UniProtKB/TrEMBL
  3.30.40.10 UniProtKB/TrEMBL
  6.10.140.1100 UniProtKB/TrEMBL
  DNA helicase RuvA subunit, C-terminal domain UniProtKB/TrEMBL
  Zinc finger, RanBP2-type UniProtKB/TrEMBL
InterPro Bbox1_RNF31-like UniProtKB/TrEMBL
  BRcat_RBR_RNF31-like UniProtKB/TrEMBL
  IBR_dom UniProtKB/TrEMBL
  PUB-like_dom_sf UniProtKB/TrEMBL
  PUB_domain UniProtKB/TrEMBL
  RNF31-like UniProtKB/TrEMBL
  RNF31-UBA UniProtKB/TrEMBL
  RNF31_PUB UniProtKB/TrEMBL
  RNF31_RBR_mRING-HC-like UniProtKB/TrEMBL
  TRIAD_supradom UniProtKB/TrEMBL
  UBA UniProtKB/TrEMBL
  UBA-like_sf UniProtKB/TrEMBL
  UBA_RNF31 UniProtKB/TrEMBL
  Znf_RanBP2 UniProtKB/TrEMBL
  Znf_RanBP2_sf UniProtKB/TrEMBL
  Znf_RING/FYVE/PHD UniProtKB/TrEMBL
NCBI Gene RNF31 ENTREZGENE
PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF31 UniProtKB/TrEMBL
  PTHR16004 UniProtKB/TrEMBL
Pfam HOIP-UBA UniProtKB/TrEMBL
  IBR UniProtKB/TrEMBL
  PUB UniProtKB/TrEMBL
  PUB_1 UniProtKB/TrEMBL
PROSITE TRIAD UniProtKB/TrEMBL
  UBA UniProtKB/TrEMBL
  ZF_RANBP2_1 UniProtKB/TrEMBL
  ZF_RANBP2_2 UniProtKB/TrEMBL
SMART IBR UniProtKB/TrEMBL
  ZnF_RBZ UniProtKB/TrEMBL
Superfamily-SCOP RING/U-box UniProtKB/TrEMBL
  SSF143503 UniProtKB/TrEMBL
  SSF46934 UniProtKB/TrEMBL
  SSF90209 UniProtKB/TrEMBL
UniProt A0A0D9RU66 ENTREZGENE, UniProtKB/TrEMBL