ST8SIA1 (ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1) - Rat Genome Database

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Gene: ST8SIA1 (ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1) Chlorocebus sabaeus
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Symbol: ST8SIA1
Name: ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1
RGD ID: 18667159
Description: ENCODES a protein that exhibits sialyltransferase activity (ortholog); INVOLVED IN cell population proliferation (ortholog); cellular response to heat (ortholog); epithelial cell proliferation (ortholog); ASSOCIATED WITH genetic disease (ortholog); liver disease (ortholog); toxic encephalopathy (ortholog); FOUND IN Golgi apparatus (inferred); Golgi membrane (inferred); membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: alpha-N-acetylneuraminide alpha-2,8-sialyltransferase
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11122,035,111 - 22,172,244 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1122,035,661 - 22,170,548 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606912,973,699 - 13,108,791 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
ST8SIA1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11122,035,111 - 22,172,244 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1122,035,661 - 22,170,548 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606912,973,699 - 13,108,791 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
ST8SIA1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381222,193,391 - 22,334,707 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1222,063,773 - 22,437,041 (-)EnsemblGRCh38hg38GRCh38
GRCh371222,346,325 - 22,487,641 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361222,245,200 - 22,378,915 (-)NCBINCBI36Build 36hg18NCBI36
Celera1227,500,769 - 27,642,080 (-)NCBICelera
Cytogenetic Map12p12.1NCBI
HuRef1222,119,372 - 22,260,647 (-)NCBIHuRef
CHM1_11222,311,335 - 22,452,993 (-)NCBICHM1_1
T2T-CHM13v2.01222,071,418 - 22,212,735 (-)NCBIT2T-CHM13v2.0
St8sia1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396142,767,267 - 142,935,247 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl6142,767,271 - 142,910,178 (-)EnsemblGRCm39 Ensembl
GRCm386142,821,541 - 142,989,528 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6142,821,545 - 142,964,452 (-)EnsemblGRCm38mm10GRCm38
MGSCv376142,770,061 - 142,912,972 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv366142,778,763 - 142,921,674 (-)NCBIMGSCv36mm8
Celera6145,883,284 - 146,020,842 (-)NCBICelera
Cytogenetic Map6G3NCBI
cM Map674.78NCBI
St8sia1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84177,513,966 - 177,651,553 (-)NCBIGRCr8
mRatBN7.24175,782,989 - 175,921,338 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4175,789,947 - 175,920,708 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4182,084,919 - 182,215,399 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04177,869,195 - 177,999,668 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04176,489,766 - 176,620,240 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04177,065,266 - 177,195,942 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4177,065,168 - 177,196,180 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04241,274,072 - 241,403,150 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44180,722,382 - 180,852,639 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.14180,967,505 - 181,097,763 (-)NCBI
Celera4164,320,658 - 164,451,184 (-)NCBICelera
Cytogenetic Map4q44NCBI
St8sia1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541317,672,460 - 17,805,623 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541317,667,434 - 17,810,671 (-)NCBIChiLan1.0ChiLan1.0
ST8SIA1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21074,434,500 - 74,618,644 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11274,430,888 - 74,615,043 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01263,972,127 - 64,112,083 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11266,578,598 - 66,712,240 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1266,578,949 - 66,712,240 (+)Ensemblpanpan1.1panPan2
ST8SIA1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12724,879,103 - 25,027,014 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2724,879,380 - 25,023,618 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2721,333,527 - 21,483,378 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02725,096,491 - 25,246,504 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2725,096,525 - 25,238,358 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12724,894,560 - 25,045,533 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02724,918,605 - 25,068,657 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02721,502,984 - 21,653,212 (-)NCBIUU_Cfam_GSD_1.0
St8sia1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494586,748,403 - 86,880,894 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365484,671,284 - 4,796,426 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365484,671,257 - 4,797,917 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ST8SIA1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl551,211,336 - 51,358,144 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1551,211,312 - 51,364,226 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
St8sia1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475216,483,378 - 16,633,776 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475216,483,168 - 16,633,938 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium 12
Low 36 20 48
Below cutoff

Sequence


RefSeq Acc Id: ENSCSAT00000005957   ⟹   ENSCSAP00000004169
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl1122,035,661 - 22,170,548 (-)Ensembl
RefSeq Acc Id: XM_007967886   ⟹   XP_007966077
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11122,035,111 - 22,170,556 (-)NCBI
Vero_WHO_p1.0NW_02366606912,973,699 - 13,108,791 (+)NCBI
Sequence:
RefSeq Acc Id: XM_037990269   ⟹   XP_037846197
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366606912,974,018 - 13,108,791 (+)NCBI
RefSeq Acc Id: XM_037990270   ⟹   XP_037846198
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366606912,974,058 - 13,108,791 (+)NCBI
Protein Sequences
Protein RefSeqs XP_007966077 (Get FASTA)   NCBI Sequence Viewer  
  XP_037846197 (Get FASTA)   NCBI Sequence Viewer  
  XP_037846198 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000004169
  ENSCSAP00000004169.1
RefSeq Acc Id: XP_007966077   ⟸   XM_007967886
- Peptide Label: isoform X1
- UniProtKB: A0A0D9R6D0 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCSAP00000004169   ⟸   ENSCSAT00000005957
RefSeq Acc Id: XP_037846197   ⟸   XM_037990269
- Peptide Label: isoform X2
RefSeq Acc Id: XP_037846198   ⟸   XM_037990270
- Peptide Label: isoform X3


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000007905 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000005957.1 UniProtKB/TrEMBL
Gene3D-CATH 3.90.1480.20 UniProtKB/TrEMBL
InterPro Glyco_trans_29 UniProtKB/TrEMBL
  GT29-like_sf UniProtKB/TrEMBL
  Sialyl_trans UniProtKB/TrEMBL
KEGG Report csab:103218743 UniProtKB/TrEMBL
NCBI Gene ST8SIA1 ENTREZGENE
PANTHER ALPHA-2,8-SIALYLTRANSFERASE UniProtKB/TrEMBL
  ALPHA-N-ACETYLNEURAMINIDE ALPHA-2,8-SIALYLTRANSFERASE UniProtKB/TrEMBL
Pfam Glyco_transf_29 UniProtKB/TrEMBL
PIRSF Sialyl_trans UniProtKB/TrEMBL
UniProt A0A0D9R6D0 ENTREZGENE, UniProtKB/TrEMBL